- Maryland, USA
Highlights
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gscripts Public
mish-mash of scripts I have been using in genomics (bioinformatics) or IT/engineering
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claude-dev Public
Forked from saoudrizwan/claude-devAutonomous coding agent right in your IDE, capable of creating/editing files, executing commands, and more with your permission every step of the way.
TypeScript MIT License UpdatedSep 26, 2024 -
autodev Public
Forked from mikesharkeyai/klarnacrmA self improving AI script to build a Klarna CRM with o1-mini
Python UpdatedSep 20, 2024 -
stringtie Public
Transcript assembly and quantification for RNA-Seq
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ChatGPTServerCommander Public
Forked from wonderwhy-er/ChatGPTServerCommanderThis project is a server that exposes terminal commands and file editing functionality as an API for ChatGPT Actions. In essence, it allows you to control any machine where you install this with Ch…
JavaScript MIT License UpdatedSep 10, 2024 -
codebaser Public
utility scripts facilitating LLM aided interaction with a codebase
Python UpdatedSep 8, 2024 -
gffcompare Public
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
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gclib Public
GCLib - Genomic C++ library of reusable code for bioinformatics projects
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ProfSynapse_CoR Public
Forked from ProfSynapse/Synapse_CoRchain of reasoning technique from the beginning of GPT era
UpdatedJul 1, 2024 -
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custom-chatgpt-actions-server Public
Forked from wonderwhy-er/custom-chatgpt-actions-server-boilerplateNode.js based boilerplate for custom action servers for ChatGPT, OpenAPI, LocalTunnel for local development and so on
JavaScript MIT License UpdatedMay 15, 2024 -
bamread Public
basic SAM/BAM/CRAM file reading/writing (and C++ wrapper classes) using HTSlib API
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tensorQTL_R Public
R-based workflow to prep data for tensorQTL
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fastp Public
Forked from OpenGene/fastpAn ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
C++ MIT License UpdatedDec 8, 2023 -
openai-cookbook Public
Forked from openai/openai-cookbookExamples and guides for using the OpenAI API
MDX MIT License UpdatedDec 4, 2023 -
gtex-pipeline Public
Forked from broadinstitute/gtex-pipelineGTEx & TOPMed data production and analysis pipelines
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 27, 2023 -
chatgpt-your-files Public
Forked from supabase-community/chatgpt-your-filesProduction-ready MVP for securely chatting with your documents using pgvector
TypeScript UpdatedNov 23, 2023 -
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quivr Public
Forked from QuivrHQ/quivr🧠 Dump all your files and chat with it using your Generative AI Second Brain using LLMs ( GPT 3.5/4, Private, Anthropic, VertexAI ) & Embeddings 🧠
TypeScript Apache License 2.0 UpdatedSep 21, 2023 -
htslib Public
Forked from samtools/htslibC library for high-throughput sequencing data formats
C Other UpdatedSep 18, 2023 -
SPIT Public
Forked from berilerdogdu/SPITDTU analysis tool
Jupyter Notebook GNU General Public License v3.0 UpdatedJul 14, 2023 -
GPTvecdb Public
Forked from wombyz/HormoziGPTexample to make and query embeddings from a custom set of documents
Python UpdatedJul 11, 2023 -
cdbfasta Public
Constant DataBase tools for indexing and retrieving records from multi-FASTA or similarly structured files
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gffread Public
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
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gfstlib Public
Forked from fstpackage/fstlibfast multi-threaded serialization of tabular data (fstlib) adapted for genomics use cases
C++ Mozilla Public License 2.0 UpdatedJan 9, 2023 -
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samcounts Public
report feature counts and read mapping stats for RNA-Seq alignment data
MIT License UpdatedJul 6, 2022 -