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  • gscripts Public

    mish-mash of scripts I have been using in genomics (bioinformatics) or IT/engineering

    Perl 7 2 The Unlicense Updated Sep 29, 2024
  • Autonomous coding agent right in your IDE, capable of creating/editing files, executing commands, and more with your permission every step of the way.

    TypeScript MIT License Updated Sep 26, 2024
  • autodev Public

    Forked from mikesharkeyai/klarnacrm

    A self improving AI script to build a Klarna CRM with o1-mini

    Python Updated Sep 20, 2024
  • stringtie Public

    Transcript assembly and quantification for RNA-Seq

    C++ 367 77 MIT License Updated Sep 13, 2024
  • This project is a server that exposes terminal commands and file editing functionality as an API for ChatGPT Actions. In essence, it allows you to control any machine where you install this with Ch…

    JavaScript MIT License Updated Sep 10, 2024
  • codebaser Public

    utility scripts facilitating LLM aided interaction with a codebase

    Python Updated Sep 8, 2024
  • gffcompare Public

    classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

    C++ 199 32 MIT License Updated Jul 7, 2024
  • gclib Public

    GCLib - Genomic C++ library of reusable code for bioinformatics projects

    C++ 33 13 Other Updated Jul 7, 2024
  • chain of reasoning technique from the beginning of GPT era

    Updated Jul 1, 2024
  • dbcite Public

    JavaScript Updated Jun 22, 2024
  • Node.js based boilerplate for custom action servers for ChatGPT, OpenAPI, LocalTunnel for local development and so on

    JavaScript MIT License Updated May 15, 2024
  • bamread Public

    basic SAM/BAM/CRAM file reading/writing (and C++ wrapper classes) using HTSlib API

    C++ 4 Updated May 14, 2024
  • tensorQTL_R Public

    R-based workflow to prep data for tensorQTL

    Jupyter Notebook 1 Updated Feb 23, 2024
  • r-dte Public

    Differential Transcript Expression in R

    R Updated Feb 2, 2024
  • fastp Public

    Forked from OpenGene/fastp

    An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

    C++ MIT License Updated Dec 8, 2023
  • Examples and guides for using the OpenAI API

    MDX MIT License Updated Dec 4, 2023
  • GTEx & TOPMed data production and analysis pipelines

    Python BSD 3-Clause "New" or "Revised" License Updated Nov 27, 2023
  • Production-ready MVP for securely chatting with your documents using pgvector

    TypeScript Updated Nov 23, 2023
  • pygmailon Public

    test/cleanup Gmail Inbox using GMail API

    Python Updated Oct 29, 2023
  • quivr Public

    Forked from QuivrHQ/quivr

    🧠 Dump all your files and chat with it using your Generative AI Second Brain using LLMs ( GPT 3.5/4, Private, Anthropic, VertexAI ) & Embeddings 🧠

    TypeScript Apache License 2.0 Updated Sep 21, 2023
  • htslib Public

    Forked from samtools/htslib

    C library for high-throughput sequencing data formats

    C Other Updated Sep 18, 2023
  • SPIT Public

    Forked from berilerdogdu/SPIT

    DTU analysis tool

    Jupyter Notebook GNU General Public License v3.0 Updated Jul 14, 2023
  • GPTvecdb Public

    Forked from wombyz/HormoziGPT

    example to make and query embeddings from a custom set of documents

    Python Updated Jul 11, 2023
  • cdbfasta Public

    Constant DataBase tools for indexing and retrieving records from multi-FASTA or similarly structured files

    C++ 9 Updated Jul 10, 2023
  • gffread Public

    GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

    C++ 370 39 MIT License Updated Apr 25, 2023
  • GenomicRanges workbook - the power of GRanges

    R Updated Apr 3, 2023
  • gfstlib Public

    Forked from fstpackage/fstlib

    fast multi-threaded serialization of tabular data (fstlib) adapted for genomics use cases

    C++ Mozilla Public License 2.0 Updated Jan 9, 2023
  • r_delarray Public

    DelayedArray data in SummarizedExperiment

    R Updated Oct 14, 2022
  • samcounts Public

    report feature counts and read mapping stats for RNA-Seq alignment data

    MIT License Updated Jul 6, 2022
  • react101 Public

    react intro

    JavaScript Updated Jun 8, 2022