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Commits on Jan 26, 2023

• Throw exceptions for unsupported complex variants

  alumi

  committedJan 26, 2023
  6f322e0

• Fix conversion of insertion near a splice site

  alumi

  committedJan 26, 2023
  1edd963

Commits on Jul 5, 2022

• Merge pull request #54 from chrovis/fix/codecov

  alumi

  committedJul 5, 2022
  1d0a5c9

Commits on Jun 29, 2022

• Merge pull request #53 from chrovis/fix/bumpup-snapshot

  alumi

  committedJun 29, 2022
  5358cf1

• Test with clojure 1.11

  alumi

  committedJun 29, 2022
  9a0dfdb

• Fix spelling

  alumi

  committedJun 29, 2022
  bf7445b

Commits on Jun 27, 2022

• Add a feature to annotate fusion genes

  alumi

  committedJun 27, 2022
  12c1026

Commits on Jun 24, 2022

• Update clojure to 1.11.1

  alumi

  committedJun 24, 2022
  69f7aa9

• Update proton to 0.2.2

  alumi

  committedJun 24, 2022
  32a9772

• Update org.apache.commons/commons-compress to 1.21

  alumi

  committedJun 24, 2022
  0c8d17c

• Update cljam to 0.8.3

  alumi

  committedJun 24, 2022
  43b2ed6

• Update clj-hgvs to 0.4.5

  alumi

  committedJun 24, 2022
  6d527e5

• Update org.clojure/tools.logging to 1.2.4

  alumi

  committedJun 24, 2022
  fe4b0af

Commits on Jun 21, 2021

• Merge pull request #41 from chrovis/feature/github-actions

  alumi

  committedJun 21, 2021
  8d9b279

Commits on Jun 17, 2019

• Merge pull request #27 from chrovis/fix/ambiguous-coord-ex

  alumi

  committedJun 17, 2019
  2995996

Commits on Jun 3, 2019

• DNA HGVS can include ref bases for delins record

  alumi

  committedJun 3, 2019
  0bc72ab

• Use clojure.tools.logging/warnf instead of warn + format

  alumi

  committedJun 3, 2019
  4e1dd3f

• Rename a namespace alias

  alumi

  committedJun 3, 2019
  0623808

Commits on May 29, 2019

• Include MNVs when converting protein HGVS to VCF variants

  alumi

  committedMay 29, 2019
  59cb872

• vcf-variant->protein-hgvs for :ref-gene-entity returns a single result

  alumi

  committedMay 29, 2019
  a656a93

Commits on May 28, 2019

• Tweak test codes for hgvs->vcf

  alumi

  committedMay 28, 2019
  febc2b2

Commits on May 21, 2019

• Update criterium to 0.4.5

  alumi

  committedMay 21, 2019
  3ad4492

• Update proton to 0.1.8

  alumi

  committedMay 21, 2019
  4a058cd

• Update clj-hgvs to 0.3.1

  alumi

  committedMay 21, 2019
  87c09ff

• Update cljam to 0.7.1

  alumi

  committedMay 21, 2019
  44b6658

• Cosmetic changes

  alumi

  committedMay 21, 2019
  57fab4a

Commits on May 16, 2019

• Check reference amino acids when converting a hgvs to vcf variants

  alumi

  committedMay 16, 2019
  b85f3b5

• Add a test for hgvs->vcf->hgvs conversion

  alumi

  committedMay 16, 2019
  a7b6ed4

• Prepare for next development iteration (0.5.1-SNAPSHOT)

  alumi

  committedMay 16, 2019
  5e4fb4a

Commits on Dec 6, 2018

• Fix pos of hgvs->vcf-variants for genes on reverse strand

  alumi

  committedDec 6, 2018
  d21df86

Commits on Aug 29, 2018

• Use :forward/:reverse as values for the key ':strand'

  alumi

  committedAug 29, 2018
  589bdd1

Commits on Aug 28, 2018

• Use :forward/:reverse as values for the key ':strand' in refGene exons

  alumi

  committedAug 28, 2018
  ab0ae45

• Fix wording 'gene'

  alumi

  committedAug 28, 2018
  b321638

Commits on Aug 24, 2018

• Rename function cds-exon-seq to cds-seq

  alumi

  committedAug 24, 2018
  32f314d

• Replace varity.util/revcomp-bases with cljam.util.sequence/revcomp

  alumi

  committedAug 24, 2018
  70113dd

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