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hires-utils

scHi-C data wrangling tools

Installation

No package now, use git.

git clone https://github.com/zhuakexi/hires-utils.git

Usage

Unix style, with subcommand. Works with python3.

usage: hires [-h] command ...

Functions for hires pipline

optional arguments:
  -h, --help      show this help message and exit

These are sub-commands:
  command
    clean_leg     clean promiscuous legs that contacts with multiple legs
    clean_splicing
                  clean exon splicing from mRNA in contact file
    align         caculate rmsd between .3dg replicates
    clean_isolated
                  remove isolated contacts according to L-0.5 distance

Type "subcommand -h" for details.