Code and data for: Yang & Shaman, Development of a model-inference system for estimating epidemiological characteristics of SARS-CoV-2 variants of concern. (2021)
This folder includes all relavant data needed to run the model-inference and simulations
This folder includes all model code used in this study. Subfolders include code for different parts of the study, as labeled
Those labeled 'driver*': Used to run three sub-studies of model-inference and simulation, as indicated by the name
This folder includes compiled model-inference results, as labeled Note that for the multi-variant simulations, because the files are too large, we do not include those. For interested readers, please run those using the provided code on your local machine and then compile the results using the analysis code.
wy2202 at cumc.columbia.edu
Wan Yang & Jeffrey Shaman, Epidemiological characteristics of three SARS-CoV-2 variants of concern and implications for future COVID-19 pandemic outcomes. medRxiv, 2021.2005.2019.21257476 (2021). https://www.medrxiv.org/content/10.1101/2021.05.19.21257476v1
Wan Yang & Jeffrey Shaman, Development of a model-inference system for estimating epidemiological characteristics of SARS-CoV-2 variants of concern. Nat Commun 12, 5573 (2021). https://doi.org/10.1038/s41467-021-25913-9