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Commits

History for

Commits on Jun 13, 2018

pass Slurm max memory to java in vcell-batch.
jcschaff
committedJun 13, 2018

Commits on Jun 12, 2018

Merge branch 'master' of https://github.com/virtualcell/vcell.git
jcschaff
committedJun 12, 2018
set min Slurm job mem from 1g to 4g (until estimates correct).
jcschaff
committedJun 12, 2018

Commits on Jun 11, 2018

fix biomodel/mathmodel references in "SimpleJobStatus" query
danv61
committedJun 11, 2018

Commits on Jun 4, 2018

HtcProxy.killjobs() replaces Message Topic for sim suicide.
jcschaff
committedJun 4, 2018

Commits on Jun 1, 2018

sbatch --no-kill --no-requeue switches, min job mem 256M to 1000M
jcschaff
committedJun 1, 2018
set java max heap size to 200M within vcell-batch
jcschaff
committedJun 1, 2018

Commits on May 30, 2018

improve batch scheduler
jcschaff
committedMay 30, 2018
correct slurm input file syntax.
jcschaff
committedMay 30, 2018
BatchScheduler reports per job decisions, Slurm job mem limit.
jcschaff
committedMay 30, 2018

Commits on May 29, 2018

further clean up database logging.
jcschaff
committedMay 29, 2018

Commits on May 25, 2018

gracefully tolerate "N/A" for Slurm node statistics
jcschaff
committedMay 25, 2018

Commits on May 22, 2018

Added sbmlName field to SpeciesContext
danv61
committedMay 22, 2018
remove NPE while killing zombie jobs (which are not found in DB).
jcschaff
committedMay 22, 2018

Commits on May 20, 2018

sim state machine uses internal broker for clientStatus messages.
jcschaff
committedMay 20, 2018

Commits on May 19, 2018

activemq service for internal use and another for sim events.
jcschaff
committedMay 19, 2018

Commits on May 15, 2018

added SimulationJobStatus query, removed old vcell console
jcschaff
committedMay 15, 2018

Commits on May 14, 2018

remove NPE from simulation status query (SimulationDatabase)
jcschaff
committedMay 14, 2018
added Simulation DB cleanup every 15 min from vcell-db
jcschaff
committedMay 14, 2018

Commits on May 9, 2018

vcell-master removed, vcell-sched anywhere, fix BNG parsing.
jcschaff
committedMay 9, 2018

Commits on May 7, 2018

correct Dockerfiles, improve vcell-sched logging.
jcschaff
committedMay 7, 2018
added vcell-data (CombinedData|ExportDataOnly|SimDataOnly).
jcschaff
committedMay 7, 2018
vcell-sched, vcell-submit services for sim dispatch/slurm submit.
jcschaff
committedMay 7, 2018

Commits on May 6, 2018

misc updates to db service, Dockerfile-master simCacheSize prop.
jcschaff
committedMay 6, 2018

Commits on May 5, 2018

vcell-db container (DatabaseServer)
jcschaff
committedMay 5, 2018
simdataCacheSize param defaults to 10MB for simdata, 1MB else.
jcschaff
committedMay 5, 2018

Commits on May 3, 2018

ignore platform dependent unit test.
jcschaff
committedMay 3, 2018
CLI health cmd, SendErrorMsg added to vcell-batch container
jcschaff
committedMay 3, 2018

Commits on May 2, 2018

specify singularity 2.4.2 in module load
jcschaff
committedMay 2, 2018

Commits on Apr 28, 2018

move temp directory to /scratch/vcell and create if necessary.
jcschaff
committedApr 28, 2018
copy singularity image only to compute nodes.
jcschaff
committedApr 28, 2018
setting TMPDIR in vcell-batch from VCell configuration (/scratch).
jcschaff
committedApr 28, 2018

Commits on Apr 21, 2018

reduced logging of sql statements.
jcschaff
committedApr 21, 2018

Commits on Apr 19, 2018

ignore Slurm reported 'load' and allocate 1 cpu for normal jobs.
jcschaff
committedApr 19, 2018
create singularity directory on Slurm nodes, fix scheduler logic.
jcschaff
committedApr 19, 2018