Global analysis platform for fluorescence data
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Updated
Sep 19, 2024 - Python
Global analysis platform for fluorescence data
Real-time, interactive exploration of 3D image stacks
gateway for segmentation data to Rstats & visualization with ggplot2 - in development
Automated processing of plate reader data: static and time-course measurements. Normalize fluorescence to OD, make plots
Consistent with up to date protocols, hs6PROCESS_INTERACTIVE processes raw backscattering data as sampled in natural water bodies using HOBI Labs Hydroscat-6 (hs6). hs6PROCESS_SEABASS should is also designed to be compatible with Hydroscat-4 and 2.
A python code for analyzing photobleaching in fluorescence microscopy from a time series TIF image stack
Consistent with up to date protocols and NASA's SEABASS submission standards, hs6PROCESS_SEABASS processes raw backscattering data as sampled in natural water bodies using HOBI Labs Hydroscat-6 (hs6). hs6PROCESS_SEABASS should also be compatible with Hydroscat-4 and 2.
This repository is very specific. It contains a nested dataset of 301 files. Six signals are processed: four uv-vis and a fluorescence signal.
Tools for analysing fluorescence data using PARAFAC and Machine Learning (ML)
SUTD 2020 10.007 Modelling the Systems World 1D Project
*Expo*/*Data Exporter* can extract measurement data from predefined data sets in order to simplify the subsequent plotting in graphs. Additionally, there is the possibility to normalize the data.
Saturation-compensated measurements for fluorescence lifetime imaging microscopy
Software and data associated with the article titled, "Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA," Biophys. J. Accepted, (2023). doi:10.1016/j.bpj.2023.03.002
This is an open source program that takes a .opj input and processes that data into various .csv files based on user preferences This program was written in R and used the following packages: (Rcpp) (Ropj) (ggplot2) (shiny)
Take Olympus vsi stacks. Bleach-correct, write out ome-tiff. Save clicks.
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