Move plot_albedo, other config to config.R

config.example.R

@@ -2,15 +2,15 @@
 # EDR data assimilation
 # Configuration script
 #
-# Copy this script to 'config.R' and `source` it at the 
+# Copy this script to 'config.R' and `source` it at the
 # beginning of any EDR script
 ############################################################
 
 ############################################################
 # Set paths
 ############################################################
-# NOTE: `normalizePath` is called to generate a complete 
-# path, which should make this script working 
+# NOTE: `normalizePath` is called to generate a complete
+# path, which should make this script working
 # directory-agnostic.
 
 # This directory should contain the following:
@@ -25,7 +25,7 @@ common_inputs_dir <- normalizePath(common_inputs_dir)
 site_met_dir <- file.path('ed-inputs', 'met3', 'US-WCr')
 site_met_dir <- normalizePath(site_met_dir)
 
-# These are the paths to the executables for the full ED2 
+# These are the paths to the executables for the full ED2
 # model and EDR, respectively
 ed_exe_path <- '/home/ashiklom/Projects/ED2/ED/build/ed_2.1'
 edr_exe_path <- '/home/ashiklom/Projects/ED2/EDR/build/ed_2.1'
@@ -40,3 +40,8 @@ site_lon <- -90.5
 
 # Date-time for EDR runs
 datetime <- as.POSIXlt('2004-07-01 12:00:00')
+
+# Inversion settings
+plot_albedo <- FALSE #TRUE/FALSE
+generate_summary_figs <- FALSE #TRUE/FALSE
+hidden <- TRUE  #TRUE/FALSE

examples/inversion_bayestools.R

@@ -7,11 +7,6 @@ library(redr)
 data(css_ex1)
 data(pss_ex1)
 data(site_ex1)
-
-plot_albedo <- FALSE #TRUE/FALSE
-generate_summary_figs <- FALSE #TRUE/FALSE
-hidden <- TRUE  #TRUE/FALSE
-PEcAn.logger::logger.setLevel("INFO")
 #--------------------------------------------------------------------------------------------------#