2 Releases published by 1 person

• 1.1.6.post1 scvi-tools 1.1.6.post1

  published Sep 15, 2024

• 1.1.6.post2 scvi-tools 1.1.6.post2

  published Sep 16, 2024

19 Pull requests merged by 5 people

• Backport PR #2960 on branch 1.2.x (docs: Counterfactual prediction user guide)

  #2986 merged Sep 21, 2024

• docs: Counterfactual prediction user guide

  #2960 merged Sep 21, 2024

• Update pyproject.toml

  #2985 merged Sep 20, 2024

• test: Fix hugging face create repo test which was failing

  #2982 merged Sep 20, 2024

• Manual merge ruff and version fixes into 1.2

  #2980 merged Sep 19, 2024

• Update Dockerfile

  #2978 merged Sep 18, 2024

• docs: automated update of tutorials

  #2977 merged Sep 17, 2024

• docs: fix progress bar interactive style in RTD

  #2959 merged Sep 17, 2024

• update ruff rules

  #2973 merged Sep 17, 2024

• docs: automated update of tutorials

  #2976 merged Sep 17, 2024

• [pre-commit.ci] pre-commit autoupdate

  #2975 merged Sep 17, 2024

• update docker to py3.12

  #2974 merged Sep 17, 2024

• Backport PR #2970 on branch 1.2.x (Drop Python 3.9)

  #2972 merged Sep 16, 2024

• Drop Python 3.9

  #2970 merged Sep 16, 2024

• Update pyproject.toml for 1.1.6

  #2971 merged Sep 16, 2024

• Backport PR #2936 on branch 1.2.x (feat(train) Add support for categorial covariates in scArches)

  #2964 merged Sep 15, 2024

• [pre-commit.ci] pre-commit autoupdate

  #2957 merged Sep 15, 2024

• Update pyproject.toml

  #2969 merged Sep 15, 2024

• Backport PR #2961 on branch 1.2.x (Remove dependency anndata 0.10.8)

  #2962 merged Sep 15, 2024

1 Pull request opened by 1 person

• Backport PR #2982 on branch 1.2.x (test: Fix hugging face create repo test which was failing)

  #2984 opened Sep 20, 2024

12 Issues closed by 2 people

• Update typing in all files to match new format

  #2432 closed Sep 21, 2024

• MultiVI Tensor shape invalid values nan

  #2262 closed Sep 21, 2024

• lightning dependency critical CVE - Update dependency list, especially for conda which is pinned below the CVE patch

  #2941 closed Sep 21, 2024

• ValueError: "high is out of bounds for int32" when running setup_anndata on large AnnData object

  #2968 closed Sep 21, 2024

• total_vi.train() ValueError: Expected parameter loc (Tensor of shape (256, 20)) of distribution Normal(loc: torch.Size([256, 20]), scale: torch.Size([256, 20])) to satisfy the constraint Real()

  #2981 closed Sep 20, 2024

• batch and max_kl_weight parameters ignored when mapping to scvi reference

  #2331 closed Sep 19, 2024

• installation error when import scvi in conda/pip

  #2955 closed Sep 19, 2024

• User guide: Counterfactuals

  #1176 closed Sep 19, 2024

• Fix the progress bar during training models trough tout the tutorials

  #2958 closed Sep 17, 2024

• Drop python 3.9 and replace with python 3.12

  #2966 closed Sep 16, 2024

• change 1.1.6 release requirements

  #2967 closed Sep 15, 2024

• potential issue with zinb / nb loss

  #2965 closed Sep 15, 2024

5 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• Adding model with cycle consistency and VampPrior

  #2421 commented on Sep 21, 2024 • 27 new comments

• feat(external): implement METHLYVI for scBS-seq data

  #2834 commented on Sep 15, 2024 • 0 new comments

• refactor(model): refactor out common minified mode methods

  #2883 commented on Sep 15, 2024 • 0 new comments

• feat(train) Add support for torch.compile (EXPERIMENTAL)

  #2931 commented on Sep 19, 2024 • 0 new comments

• Custom dataloader registry support

  #2932 commented on Sep 17, 2024 • 0 new comments