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German Cancer Research Center (DKFZ)
- Heidelberg, Germany
- https://bioinfocopilot.tilda.ws
- @pritamkpanda
- in/pritam-kumar-panda
- https://scholar.google.de/citations?hl=de&user=H2ggrzQAAAAJ
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Spatial_Transcriptomics Public
10x Visium spatial transcriptomics data analysis with Scanpy
Jupyter Notebook UpdatedSep 9, 2024 -
grid_generation_vina Public
Generating a grid for docking in AutoDock Vina without using GUI tools like MGLTools
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Molecular-Dynamics Public
Self explained tutorial for molecular dynamics simulation using gromacs
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CHAPERONg Public
Forked from abeebyekeen/CHAPERONgCHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses
Shell GNU General Public License v3.0 UpdatedAug 28, 2024 -
python_for_microscopists Public
Forked from bnsreenu/python_for_microscopistshttps://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
Jupyter Notebook MIT License UpdatedAug 27, 2024 -
GMX_MMPB-GBSA Public
gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
1 UpdatedAug 26, 2024 -
workflows-nextflow Public
Forked from carpentries-incubator/workflows-nextflowWorkflow management with Nextflow and nf-core
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TDC Public
Forked from mims-harvard/TDCTherapeutics Commons: Artificial Intelligence Foundation for Therapeutic Science
Jupyter Notebook MIT License UpdatedAug 2, 2024 -
ML-TISCH2-scRNAseq Public
Repository containing various regression models implemented in Python, including Ridge, Random Forest, Gradient Boosting, SVR, and a neural network using Keras
Jupyter Notebook MIT License UpdatedJul 30, 2024 -
Drug_designing_ML Public
Jupyter notebooks containing ML based approach for drug designing and chemoinformatics
Jupyter Notebook UpdatedJul 26, 2024 -
python-docking Public
Forked from janash/iqb-2024Notebooks and environment set up for IQB 2024 workshop
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJul 12, 2024 -
sanbomics_scripts Public
Forked from mousepixels/sanbomics_scriptsscripts and notebooks from sanbomics
Jupyter Notebook UpdatedJul 10, 2024 -
nextflow-website Public
Forked from nextflow-io/websiteNextflow public web site
HTML UpdatedJul 3, 2024 -
PSICHIC Public
Forked from huankoh/PSICHICPSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence data
Jupyter Notebook Apache License 2.0 UpdatedJun 17, 2024 -
lazypredict Public
Forked from shankarpandala/lazypredictLazy Predict help build a lot of basic models without much code and helps understand which models works better without any parameter tuning
Python MIT License UpdatedJun 2, 2024 -
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CADD_Vault Public
Forked from DrugBud-Suite/CADD_VaultHTML Creative Commons Attribution 4.0 International UpdatedMay 20, 2024 -
misato-dataset Public
Forked from t7morgen/misato-datasetStructure based protein-ligand affinity
Jupyter Notebook GNU Lesser General Public License v2.1 UpdatedMay 13, 2024 -
practical_cheminformatics_tutorials Public
Forked from PatWalters/practical_cheminformatics_tutorialsPractical Cheminformatics Tutorials
Jupyter Notebook MIT License UpdatedMay 12, 2024 -
I-PV Public
Forked from IbrahimTanyalcin/I-PVInteractive Protein Sequence VIsualization/Viewer - Interactive Circos
HTML UpdatedMay 5, 2024 -
open-interpreter Public
Forked from OpenInterpreter/open-interpreterA natural language interface for computers
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VFVS Public
Forked from VirtualFlow/VFVSVirtualFlow for Virtual Screening
Shell GNU General Public License v2.0 UpdatedApr 22, 2024 -
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r-seurat-scripts Public
Forked from ebi-gene-expression-group/r-seurat-scriptsScripts to install as a Bioconda package for making workflows
R Apache License 2.0 UpdatedMar 28, 2024 -
nf-core-qualitycontrol Public
Quality control of fastq files using FastQC, MultiQC, FastP and FAQCS
Nextflow MIT License UpdatedMar 26, 2024 -
loupeR Public
Forked from 10XGenomics/loupeRConvert Seurat objects to 10x Genomics Loupe files.
R Other UpdatedMar 25, 2024 -
project-based-learning Public
Forked from practical-tutorials/project-based-learningCurated list of project-based tutorials
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viamd Public
Forked from scanberg/viamdVisual Interactive Analysis of Molecular Dynamics
C++ MIT License UpdatedMar 21, 2024