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Update do CovidVisualizedCountry master.do
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pourmalek authored Aug 28, 2021
1 parent a97eb57 commit 96c62ac
Showing 1 changed file with 26 additions and 1 deletion.
27 changes: 26 additions & 1 deletion 20210603/code/master/do CovidVisualizedCountry master.do
Original file line number Diff line number Diff line change
Expand Up @@ -124,7 +124,7 @@ do "$pathCovidVisualizedCountry/DELP/do CovidVisualizedCountry DELP.do"

do "$pathCovidVisualizedCountry/IHME/do CovidVisualizedCountry IHME.do"

do "$pathCovidVisualizedCountry/IMPE/do CovidVisualizedCountry IMPE.do"
// do "$pathCovidVisualizedCountry/IMPE/do CovidVisualizedCountry IMPE.do"

do "$pathCovidVisualizedCountry/LANL/do CovidVisualizedCountry LANL.do"

Expand All @@ -133,6 +133,31 @@ do "$pathCovidVisualizedCountry/SRIV/do CovidVisualizedCountry SRIV.do"
do "$pathCovidVisualizedCountry/merge/do CovidVisualizedCountry merge.do"


/*
* On 20210824, the Imperial College COVID-19 model/study removed their "old fits" –
all previously released updates from day 1 up to and including IMPE update 20210719 –
from https://github.com/mrc-ide/global-lmic-reports/tree/master/data
This means the Imperial College COVID-19 model/study is no more a periodically updated study with ACCESSIBLE updates –
short of early retirement of the study.
Several thousand lines of codes that used their previously released updates will not work.
The remedy for CovidVisualized repository https://github.com/pourmalek/CovidVisualizedCountry for the global level:
is to comment out the command line reading csv data from https://github.com/mrc-ide/global-lmic-reports/tree/master/data.
* However, the previously stored results, such as:
the graphs stored in:
CovidVisualizedCountry-main/20210603/output/merge/*.pdf
and CovidVisualizedCountry-main/20210603/output/IMPE/*.pdf
preserve a graphical copy of previously accessed the Imperial College COVID-19 model/study removed updates.
* Data version of previously accessed the Imperial College COVID-19 model/study removed updates are not stored in CovidVisualizedCountry repository
due to very large file size.
This hampers retrospective longitudinal assessment of the predictive performance of this model for Canada.
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