Petersen Lab at UCPH

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Dependencies and other related tools

Curve Fitting Toolbox (required by CellExplorer): https://se.mathworks.com/products/curvefitting.html
Signal Processing Toolbox (required by CellExplorer): https://se.mathworks.com/products/signal.html
Statistics and Machine Learning Toolbox (required by CellExplorer): https://se.mathworks.com/products/statistics.html
Parallel Computing Toolbox (optional, allows for parallel processing of certain features): https://se.mathworks.com/products/parallel-computing.html
Image Processing Toolbox (optional for NeuroScope2, allows for selection of channels from the probe layout): https://se.mathworks.com/products/image.html
DSP System Toolbox (https://se.mathworks.com/products/dsp-system.html) or the Audio Toolbox (https://www.mathworks.com/products/audio.html) (optional for NeuroScope2 to stream audio of traces).

Consistency: Stick to the chosen convention throughout the codebase.
Avoid Abbreviations: Unless widely recognized or obvious, avoid abbreviating variable names.
Meaningful Names: Prioritize meaningful and descriptive names over short, cryptic ones.

Names	Naming Convention	Examples
Variable Names	Lower Camel Case	`variableNames`
Function Names	Lower Camel Case	`functionNames`
Script Names	Lowercase with Underscores	`script_names`
Class Names	Upper Camel Case	`ClassNames`
Struct Fields	Lower Camel Case	`structFields`
Temporary Variables	Short and Contextual	`temp`
Loop Indices	Single Letters if span is short scope, otherwise please use meaning full names	`i` and `iShank`
Logical (Boolean) Variables	Prefix with is, has, can, should, etc.	`isValid`