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Commits on Jul 13, 2015

• check that openmp exists before calling omp_set_num_threads

  brf2

  committedJul 13, 2015
  7658822

• if OMP_NUM_THREADS is not defined in the env, set the number of

  brf2

  committedJul 13, 2015
  33c8a39

Commits on Jul 8, 2015

• disabled all openmp stuff as it was causing results to vary on

  brf2

  committedJul 8, 2015
  949449f

• removed some non-thread-safe OPENMP code and improved diagnostics

  brf2

  committedJul 8, 2015
  9126fdb

Commits on Jul 2, 2015

• changed NVoxels column to actually be the number of voxels with a

  brf2

  committedJul 2, 2015
  2442e9a

Commits on Jun 24, 2015

• added LABEL_PROB structure.

  brf2

  committedJun 24, 2015
  78eac5b

• fixed to work with sub mm volumes

  brf2

  committedJun 24, 2015
  bef7bd6

• fixed to work with sub mm volumes.

  brf2

  committedJun 24, 2015
  0a7daee

• fixed to work with submm volumes (mri_em_register and mri_ca_register)

  brf2

  committedJun 24, 2015
  7bd1b67

Commits on Jun 22, 2015

• fixed MRIchangeType to work with multi-frame volumes

  brf2

  committedJun 22, 2015
  520c6c9

• a

  brf2

  committedJun 22, 2015
  27f40e8

• added the -dilate <n> flag to allow dilation of the input mask. Used

  brf2

  committedJun 22, 2015
  d2511ae

Commits on Jun 11, 2015

• removed dimension check since MRImask handles different geometry for

  brf2

  committedJun 11, 2015
  5b799ca

Commits on May 25, 2015

• fixed calculation of resolution when scaling images

  brf2

  committedMay 25, 2015
  c8e4ea9

Commits on May 20, 2015

• added mri_long_normalize - program for intensity normalizing all

  brf2

  committedMay 20, 2015
  ecb6a79

Commits on May 14, 2015

• fixed case in which voxels far outside of brain were being labeled

  brf2

  committedMay 14, 2015
  ab6718d

Commits on Apr 28, 2015

• fixed case when mris->ct == NULL

  brf2

  committedApr 28, 2015
  bb3dcb0

Commits on Apr 26, 2015

• added optional suffix args to ComputeBrainVolumeStats

  brf2

  committedApr 26, 2015
  959f8ec

Commits on Apr 25, 2015

• initiatlized mri_aseg

  brf2

  committedApr 25, 2015
  aaaa7d1

• initialized resolutions

  brf2

  committedApr 25, 2015
  6eb8ddf

Commits on Apr 24, 2015

• don't freeze surface in entorhinal cortex (as defined by the

  brf2

  committedApr 24, 2015
  122893d

• allow ComputeBrainVolumeStats to have an optional suffix

  brf2

  committedApr 24, 2015
  6c67556

• assume unknown files are of type text

  brf2

  committedApr 24, 2015
  2bec89e

• added an optional suffix ComputeBrainVolumeStats

  brf2

  committedApr 24, 2015
  27d72f8

• added suffix argmuent to computing brainvol

  brf2

  committedApr 24, 2015
  78c854a

• allow a suffix to be provided to compute brainvol

  brf2

  committedApr 24, 2015
  6c1eaac

• fixed some pathological cases to improve adni results.

  brf2

  committedApr 24, 2015
  4ab0264

• fixed MRIdivide to provide float outputs

  brf2

  committedApr 24, 2015
  c750f39

Commits on Apr 10, 2015

• improved error reporting for "indices out of bound" problem.

  brf2

  committedApr 10, 2015
  a65267b

• don't core dump if input doesn't exist

  brf2

  committedApr 10, 2015
  0843b7e

• fixed a bunch of things in tiff support (support for bitmap images,

  brf2

  committedApr 10, 2015
  d3e9f79

Commits on Apr 2, 2015

• preserve pixel sizes in tiff

  brf2

  committedApr 2, 2015
  d672541

Commits on Apr 1, 2015

• added -oval and --outside_val to allow the user to specify the values

  brf2

  committedApr 1, 2015
  806f86c

• if mri_src->outside_val is nonzero use is as the background before

  brf2

  committedApr 1, 2015
  ead0832

• check for the existence of x and y res in the header before using the

  brf2

  committedApr 1, 2015
  7af7ab8

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