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Code associated with the manuscript "Tendler, Benjamin C., et al. "A method to remove the influence of fixative concentration on post-mortem T2 maps using a Kinetic Tensor model." bioRxiv (2020)."

MATLAB 2 Updated Sep 15, 2021

Course material for APMTH 205 (numerical methods) at Harvard SEAS lectured in Fall 2022

Python 9 Updated Jun 15, 2023

Neural network-based preprocessing of MRI data: Prepping brain images in seconds 🔥

Python 18 Updated Aug 21, 2024

Pydra Dataflow Engine

Python 120 59 Updated Sep 20, 2024

30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than100 days, follow your own pace. These videos ma…

Python 41,697 7,957 Updated Aug 17, 2024
Python 24 5 Updated Sep 25, 2024

NiiVue extension for vscode + standalone web app

TypeScript 21 7 Updated Oct 3, 2024

An ansible playbook to deploy a complete standalone neuroimaging workstation

Jinja 21 1 Updated Sep 12, 2024

Mirror of NifTK on cmiclab, providing 3 main GUIs and about 150+ command line apps.

C++ 21 12 Updated Jul 27, 2019

Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI

Shell 34 9 Updated Sep 29, 2024

Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2

C 17 2 Updated Sep 17, 2024

Tools for MRI mouse brain morphometry

Python 30 10 Updated Jan 16, 2017
Python 14 1 Updated Oct 3, 2024

A curated list of awesome scientific Python resources

Python 250 63 Updated Aug 31, 2024

Documentation

Python 6 Updated Sep 27, 2024

Diffusion simulation in human brain axons, NMR in Biomedicine, 2024

Cuda 2 Updated Mar 15, 2024

The official website for uniGradICON: A Foundation Model for Medical Image Registration

Python 71 4 Updated Aug 22, 2024

Functio-Structural Current (FSC) analysis

Python 4 Updated Mar 22, 2024

TE-dependent analysis of multi-echo fMRI

Python 161 95 Updated Oct 3, 2024

Turns Data and AI algorithms into production-ready web applications in no time.

Python 12,322 903 Updated Oct 4, 2024

This is a repo with links to everything you'd ever want to learn about data engineering

10,587 1,470 Updated Sep 11, 2024

A list of recommended Python libraries, and resources, intended for scientific Python users.

286 42 Updated Feb 1, 2024

BART: Toolbox for Computational Magnetic Resonance Imaging

C 292 163 Updated Sep 29, 2024

Methods for studying dynamic functional brain activity in neuroimaging data.

Python 58 18 Updated Oct 3, 2024

BluePyEfe: Blue Brain Python E-feature extraction

Python 14 12 Updated Sep 19, 2024

A list of links and resources for my Methods in Neuroimaging Course

58 3 Updated Apr 30, 2024

A list of open resources for learning and using git & github.

10 2 Updated Aug 19, 2022

Python PDF parser for scientific publications: content and figures

Python 329 53 Updated Mar 21, 2024

Prepping tables for machine learning

Python 1,167 97 Updated Oct 2, 2024
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