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Code associated with the manuscript "Tendler, Benjamin C., et al. "A method to remove the influence of fixative concentration on post-mortem T2 maps using a Kinetic Tensor model." bioRxiv (2020)."
Course material for APMTH 205 (numerical methods) at Harvard SEAS lectured in Fall 2022
Neural network-based preprocessing of MRI data: Prepping brain images in seconds 🔥
30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than100 days, follow your own pace. These videos ma…
NiiVue extension for vscode + standalone web app
An ansible playbook to deploy a complete standalone neuroimaging workstation
Mirror of NifTK on cmiclab, providing 3 main GUIs and about 150+ command line apps.
Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI
Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2
A curated list of awesome scientific Python resources
Diffusion simulation in human brain axons, NMR in Biomedicine, 2024
The official website for uniGradICON: A Foundation Model for Medical Image Registration
Turns Data and AI algorithms into production-ready web applications in no time.
This is a repo with links to everything you'd ever want to learn about data engineering
A list of recommended Python libraries, and resources, intended for scientific Python users.
BART: Toolbox for Computational Magnetic Resonance Imaging
Methods for studying dynamic functional brain activity in neuroimaging data.
BluePyEfe: Blue Brain Python E-feature extraction
A list of links and resources for my Methods in Neuroimaging Course
A list of open resources for learning and using git & github.
Python PDF parser for scientific publications: content and figures