Bilingual Language Model for Protein Sequence and Structure

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

A simple tool to identify and clean misassemblies for ancient metagenomics

PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture

frame-shift correction for long-read (meta)genomics

Small application to launch the anvi'o pangenome browser

Making BUSCO HMMs useable in Anvi'o.

Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.

A simple script to display stuff on a world map with R and ggplot

A robust, extensible metagenomics pipeline

A repository with scripts to run pipeline that are commonly used in the Meren Lab

Fast approximation of similarity for sets of very different sizes

Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

Map single amino acid variants onto protein structures. Modus operandi: explore relationships between genetic variation and structural biology.

An analysis and visualization platform for 'omics data

The code behind anvi'server

PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE …

Web content for Meren Lab

De novo Extraction of Strains from MetAgeNomes

snakemake rules for running anvio

Sequencing and analysis of crAssphage regions from around the globe

Set of useful functions and scripts for analyzing amplicon Miseq data.

A smart-mouthed Slack bot.

Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data

Shaded colorscheme for Vim

Convert QIIME files into Oligotyping subsets.

Bacterial genomes finishing tool for structural insights on draft genomes