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Update README.md
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arangrhie committed Jun 24, 2021
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4 changes: 3 additions & 1 deletion README.md
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Expand Up @@ -74,7 +74,8 @@ Total number of reads with more than 100 bp soft-clipped or hard-clipped bases w
| Chimeric_Hap | Chimeric consensus of two haplotypes | 204,0,0 | red


* issues_raw/<platform>.issues.bed : Low coverage + Flanking clipped regions
* issues_raw/\<platform\>.issues.bed : Low coverage + Flanking clipped regions

| Label | Description | R,G,B | Color|
| :--- | :--- | :---: | :---: |
| Low | Low coverage | 204,0,0 | red |
Expand All @@ -83,6 +84,7 @@ Total number of reads with more than 100 bp soft-clipped or hard-clipped bases w
| Clipped | Region with excessive read clipping | 153,153,153 | gray |


#### Other files under issues_raw:
* clipped.bed
* Absolute num. reads with clipping: hifi_pri.w1k.clip_abs.wig, ont_pri.len1k_idy85.w1k.clip_abs.wig
* Relative fraction of clipped reads compared to all reads: hifi_pri.w1k.clip_norm.wig, ont_pri.len1k_idy85.w1k.clip_norm.wig
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