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Repository for Sanchez-Romero, R., & Cole, M. W. (2021). "Combining multiple functional connectivity methods to improve causal inferences". Journal of cognitive neuroscience, 33(2), 180-194. https:…
Tools for encoding Wikipedia articles as vectors.
Package for advanced neuroimaging analysis tools.
Public repository of cmig_tools including FEMA
How to 3D print your brain from a T1 MRI image.
Prize-Collecting Steiner Forests for Interactomes
Neuroimaging widgets for jupyter notebooks
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)
Package for visualizing brain networks. Creates chord diagrams drawn using matplotlib
Python interface for generating coordinate tables and region labels from statistical MRI images
Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.
Harmonization of multi-site imaging data with ComBat (Python)
Harmonization of multi-site imaging data with ComBat
Python implementation of Network-based statistic for correlation testing
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine h…
Sparse and structured methods for supervised and unsupervised learning on large neuroimaging data
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Selecting representative subsets of vignettes for investigating multiple facets of moral judgement
Latex code for making neural networks diagrams
Visualizer for neural network, deep learning and machine learning models
ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
Pathway-Level Information Extractor (PLIER): a generative model for gene expression data