Installation

If you want to do the tutorial online via Binder, click on the banner above. Otherwise, follow the instruction below.

git clone https://github.com/janvandenschilden/biodata-mining.git
cd biodata-mining
conda install pipenv
pipenv install
pipenv run bash postBuild

Run jupyter lab

pipenv run jupyter lab
open index.ipynb

Name		Name	Last commit message	Last commit date
Latest commit History 38 Commits
img		img
workshop		workshop
.gitignore		.gitignore
01.Uniprot-API.ipynb		01.Uniprot-API.ipynb
01.a.XML.ipynb		01.a.XML.ipynb
01.b.pandas.ipynb		01.b.pandas.ipynb
02.clustalOmega-API.ipynb		02.clustalOmega-API.ipynb
03.PDBe-API.ipynb		03.PDBe-API.ipynb
04.InterProScan-API.ipynb		04.InterProScan-API.ipynb
05.STRING-API.ipynb		05.STRING-API.ipynb
06.dynamine-API.ipynb		06.dynamine-API.ipynb
07.EFoldMine-API.ipynb		07.EFoldMine-API.ipynb
08.DisoMine-API.ipynb		08.DisoMine-API.ipynb
09.BLAST-API.ipynb		09.BLAST-API.ipynb
Pipfile		Pipfile
Pipfile.lock		Pipfile.lock
README.md		README.md
apiFunctions.py		apiFunctions.py
cleanDirectory.sh		cleanDirectory.sh
clustalExample.aln		clustalExample.aln
data-mining-01.ipynb		data-mining-01.ipynb
extractFromMSA.ipynb		extractFromMSA.ipynb
fastaExample.fasta		fastaExample.fasta
index.ipynb		index.ipynb
postBuild		postBuild