Extremely fast non-cryptographic hash algorithm

Compute hash digests for DNA sequences in a FASTA file

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

A complete pipeline for metagenomic analysis

Access a database of word frequencies, in various natural languages.

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Assessing the quality of metagenome-derived genome bins using machine learning

SemiBin: metagenomics binning with self-supervised deep learning

software to identify primers that can distinguish genomes

Plant foundation DNA large language models (LLMs) trained on different models

rga: ripgrep, but also search in PDFs, E-Books, Office documents, zip, tar.gz, etc.

Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

multi1: create o1-like reasoning chains with multiple AI providers (and locally). Supports LiteLLM as backend too for 100+ providers at once.

g1: Using Llama-3.1 70b on Groq to create o1-like reasoning chains

Export and Share your ChatGPT conversation history

BAM Statistics, Feature Counting and Annotation

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

use the cigar string in the PAF to correct target and query endpoint issues

Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

Natural Language Processing for the next decade. Tokenization, Part-of-Speech Tagging, Named Entity Recognition, Syntactic & Semantic Dependency Parsing, Document Classification

A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets

sparse linear algebra library for rust

This is the 2009 version of TestU01, a software library, implemented in the ANSI C language, and offering a collection of utilities for the empirical statistical testing of uniform random number ge…

The code from NIST SP-800-22 for testing random-number generators, along with docs for reference

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

Unix, R and python tools for genomics and data science

A rust implementation of murmur3

Mining CRISPRs in Environmental Datasets

📠 Pretty and fast csv viewer for cli with cjk/emoji support.