Official implementation for ActFound: A bioactivity foundation model using pairwise meta-learning

Implementation of Alphafold 3 in Pytorch

Fast genome-wide functional annotation through orthology assignment

Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model

Bilingual Language Model for Protein Sequence and Structure

[ICLR'24 spotlight] Saprot: Protein Language Model with Structural Alphabet

Protein folding in Pymol

Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)

github for "Molecular generative model based on conditional variational autoencoder for de novo molecular design"

A simplified implementation of DSSP algorithm for PyTorch and NumPy

PyTorch Implementation for Gromov-Wasserstein Autoencoders (GWAE)

Joker is an algorithm to design antimicrobial peptides using their language

HydrAMP: a deep generative model for antimicrobial peptide discovery

Tool to design cyclic peptides that mimic proteins and target their binding partners.

Accelerated BLAST compatible local sequence aligner.

Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow

U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation

Mamba SSM architecture

deep structural disentanglement

ConoDictor predicts conopeptides superfamily using generalized profiles and hidden Markov models.

Code and data used in https://doi.org/10.1101/2021.08.01.454656

Software for clustering de novo assembled transcripts and counting overlapping reads

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Jupyter widget to interactively view molecular structures and trajectories

NMRlipids databank