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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 630 367

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 300 75

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 291 73

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 251 147

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 142 88

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 110 19

Repositories

Showing 10 of 176 repositories
  • fasthog Public

    Reasonably fast implementation of Histogram of Oriented Gradients with python bindings

    flatironinstitute/fasthog’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Oct 5, 2024
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    flatironinstitute/nifty-ls’s past year of commit activity
    Python 33 Apache-2.0 2 4 0 Updated Oct 5, 2024
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Python 38 MIT 4 1 4 Updated Oct 5, 2024
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft’s past year of commit activity
    Python 79 Apache-2.0 2 5 0 Updated Oct 5, 2024
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 5 Apache-2.0 1 14 1 Updated Oct 4, 2024
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 291 73 50 (3 issues need help) 8 Updated Oct 4, 2024
  • sparse_dot Public

    Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication

    flatironinstitute/sparse_dot’s past year of commit activity
    Python 73 MIT 10 2 0 Updated Oct 4, 2024
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 78 MIT 7 79 5 Updated Oct 4, 2024
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,283 0 13 Updated Oct 4, 2024
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 43 Apache-2.0 6 51 1 Updated Oct 4, 2024
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