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A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

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Usage questions should be posted in the plink2-users Google group (https://groups.google.com/g/plink2-users ). Three kernels from PLINK are taken. grm uses the same license as PLINK2.

If you find grm useful, please cite:

@article{chang2015second,
  title={Second-generation PLINK: rising to the challenge of larger and richer datasets},
  author={Chang, Christopher C and Chow, Carson C and Tellier, Laurent CAM and Vattikuti, Shashaank and Purcell, Shaun M and Lee, James J},
  journal={Gigascience},
  volume={4},
  number={1},
  pages={s13742--015},
  year={2015},
  publisher={Oxford University Press}
}

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A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

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