dnkennedy
Follow
Stars
Overviews the development of a ReproNim based course for the University of Delaware
Sources for poster 1886 "A pragmatic approach to reusable research objects" for the 2021 virtual OHBM.
ReproNim / metasearch
Forked from OpenNeuroLab/metasearchOpenNeuroLab MetaSearch App
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
Companion notebook to "How would ReproNim" Volume 4
Neuroimaging Data Model (NIDM): describing neuroimaging data and provenance
Annotations of academic papers. The papers were likely gathered using pubget, and the annotations made with labelbuddy
These protocols are for the analysis of subcortical volume, and cortical thickness and surface area data within FreeSurfer ROI's for ENIGMA working groups.
An ABCD-ReproNim project to prototype methods and procedures for handling (restricted) ABCD data using NIDM to create a ReproPond that can be integrated with similar data from other sources. We wil…
A standardized form generation and data collection schema to harmonize results by design across projects.
NeuroSegmentation extension for 3D Slicer
Soliciting feedback on Cloud Based Neuroimaging Guide
Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.
Sphinx for rendering the "How Would ReproNim Do That?" series of documents
Companion notebook to "How would ReproNim" Volume 4
Knowing what you know - Bayesian brain parcellation
Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist
Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
Schedule and resources from the OHBM Open Science Room: Rome 2019
Keep code, data, containers under control with git and git-annex
A POSIX shell script to assist in guaranteeing reproducible non-deterministic computation(s)
A very simple, re-executable neuroimaging publication (code)
BrainVerse is an electronic laboratory notebook built as an open-source, cross-platform desktop application to help researchers manage, track and share information in a comprehensive format.