This repository (broadinstitute/viral-ngs) is DEPRECATED; development now occurs in the following repositories:
- https://github.com/broadinstitute/viral-core
- https://github.com/broadinstitute/viral-assemble
- https://github.com/broadinstitute/viral-phylo
- https://github.com/broadinstitute/viral-classify
Pipelines are available here:
Pipeline documentation:
A set of scripts and tools for the analysis of viral NGS data.
More detailed documentation can be found at http://viral-ngs.readthedocs.org/ This includes installation instructions, usage instructions for the command line tools, and usage of the pipeline infrastructure.