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A Julia package for single cell and spatial data analysis
KolmogorovArnoldNetworks.jl is a Julia library providing implementations of Kolmogorov-Arnold neural networks
A better, faster way to count guides in CRISPR screens.
Repository containing gitpod configuration for creating and testing bioconda recipes.
AutoAWQ implements the AWQ algorithm for 4-bit quantization with a 2x speedup during inference. Documentation:
Fine-tune mistral-7B on 3090s, a100s, h100s
Accelerate your ML research using pre-built Deep Learning Models with Lux
Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with Guppy).
A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
Battenberg R package for subclonal copynumber estimation
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)
Load nanoGPT-style transformers in Julia. Code ported from @karpathy's llama2.c
Julia package for inference and training of Llama-style language models
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
A structural variation pipeline for short-read sequencing
Structural variation and indel detection by local assembly