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The official QuPath extension for InstanSeg
🌟 The Multi-Agent Framework: First AI Software Company, Towards Natural Language Programming
Aegis is a robust and flexible .NET licensing library that simplifies the implementation of various licensing models for your applications. It offers strong security features, both online and offli…
SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.
A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
Devika is an Agentic AI Software Engineer that can understand high-level human instructions, break them down into steps, research relevant information, and write code to achieve the given objective…
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
Open source Python library for building bioimage analysis pipelines
Jan is an open source alternative to ChatGPT that runs 100% offline on your computer. Multiple engine support (llama.cpp, TensorRT-LLM)
Slides for Intro to QuPath workshop
Bio Library in .NET8. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
Bioformats java library converted to .NET6 with IKVM
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Updated Sep 14, 2024
A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, …
Models and Components used for displaying forums on your website.
multimodal whole slide image registration in a graph structure
🤖 The free, Open Source alternative to OpenAI, Claude and others. Self-hosted and local-first. Drop-in replacement for OpenAI, running on consumer-grade hardware. No GPU required. Runs gguf, transf…
OpenAssistant is a chat-based assistant that understands tasks, can interact with third-party systems, and retrieve information dynamically to do so.
ilastik-shell, applets, and workflows to string them together.
Microscope control and image acquisition integrated with ImageJ
Weasis is a DICOM viewer available as a desktop application or as a web-based application.
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
A latent text-to-image diffusion model
Respository for Open-Science modular microscope system.
