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86 clean up dynamic systems library #128

Merged
merged 53 commits into from
Aug 25, 2024
Merged

86 clean up dynamic systems library #128

merged 53 commits into from
Aug 25, 2024

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stanweer1
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Updated DynSysLib by separating out systems and updating documentation

Description

All DynSysLib System files were updated by separating out the specific systems to give each one their individual documentation and get rid of the PDF document

How has this been tested?

All unit tests were run.

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to not work as expected)

Checklist

  • My code follows the code style of this project. (make clean)
  • My change requires a change to the documentation.
  • I have updated the documentation accordingly. (make html)
  • I have incremented the version number in the pyproject.toml file.
  • I have added tests to cover my changes.
  • All new and existing tests passed. (make tests)

stanweer1 and others added 30 commits July 29, 2024 21:36
@stanweer1
Merge pull request #123 from TeaspoonTDA/test_release
3ca4e06 
Merging changes to fzz into master
@lizliz
Updated folder structure
6d21087
@lizliz
Added folder structure for the DynSysLib documentation
59b454c
@lizliz
Made example of how I think we should do the rest of the DynSysLib do…
80066d6 
…cumentation
@lizliz
Updating documentation to push to main
ef51e40
@lizliz
Incrementing version number
c1fa504
@lizliz
Adding Pull request template
0380d5f
@lizliz
ran make clean
c4d2a2c
@lizliz
FIxed test issue
eb59056
@lizliz
Putting back the submodules in the documentation to continue dynsysli…
a33aeac 
…b cleanup
@maxchumley
Reorganize noise models and documentation
d1fd4fc
@lizliz
Found more dead figure links
8957ebd
@lizliz
So many broken figure links
d2f4f1c
@lizliz
Got rid of the last of the red in the compiler and fixed jupyter note…
3b78b68 
…books
@maxchumley
Updating noise models and periodic meta functions to call new functions.
6d4d9d7
@maxchumley
Updating all maps functions and documentation (only logistic map desc…
15b37be 
…ription so far)
@maxchumley
Updating documentation for logistic map, henon map, and sine map
2a3e974
@maxchumley
Updating documentation for all discrete maps in the Dynamic Systems L…
18c3238 
…ibrary
@maxchumley
Finish periodic functions documentation, and fix DynSysLib Table
7912b5d
@maxchumley
Updating maps documentation to include dynamic_state
cf9db2d
@stanweer1
Adding figures in maps and periodic fxns
3010f98
@maxchumley
Updating documentation through double pendulum system
fc89988
@stanweer1
Delayed flows and medical data
645e190
@stanweer1
Conservative and Driven Dissipative Flows
cd13570
@stanweer1
Delayed flows with new format
4c4805f
@stanweer1
Delayed system with num_param variable
72a5a8c
@stanweer1
Delayed, conservative, driven dissipative -- updated documentation
d295ad4
@maxchumley
Update maps to new parameter framework
b553480
@stanweer1
Some autonomous systems
cc0bbd7
@stanweer1
Changes to autonomous systems
6def5d7
stanweer1 and others added 21 commits August 21, 2024 15:15
@stanweer1
Figures in noise models
d478c81
@maxchumley
Ensuring all unit tests work, all systems updated except autonomous f…
818349f 
…lows
@maxchumley
Adding ddeint for delayed flows and pooch for medical data fetching a…
0005e70 
…s teaspoon dependencies
@maxchumley
Adding diffusionless lorenz attractor
145db73
@maxchumley
Updating complex butterfly system
792b8da
@maxchumley
Updating chens system
0cbc86c
@maxchumley
Update autonomous_dissipative_flows.py
6e224a4
@maxchumley
Update autonomous_dissipative_flows.py
ea14890
@stanweer1
Testing
64cce98
@maxchumley
Revert "Update autonomous_dissipative_flows.py"
b1a6ea2 
This reverts commit ea14890.
@stanweer1
Update autonomous_dissipative_flows.py
ddd78f4
@stanweer1
Autonomous
db8ade8
@stanweer1
Merge branch '86-clean-up-dynamic-systems-library' of https://github.…
f7d7aee 
…com/TeaspoonTDA/teaspoon into 86-clean-up-dynamic-systems-library
@stanweer1
Autonomous flows docs
0a9db01
@stanweer1
autonomous systems rst and tests update
b9b1c66
@maxchumley
Adding burke shaw and rucklidge
13ec978
@maxchumley
Update docs
c5ddc69
@maxchumley
Adding WINDMI system
bdc6afe
@maxchumley
Adding simplest quadratic chaotic flow
5388538
@maxchumley
ALL SYSTEMS UPDATED
0db7045 
Unit tests all work and documentation updated. Meta functions are still present.
@stanweer1
Incremented version number
003c965
@stanweer1 stanweer1 requested a review from lizliz August 25, 2024 19:24
lizliz
lizliz approved these changes Aug 25, 2024
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All looks good!

@lizliz lizliz merged commit 71ac94d into test_release Aug 25, 2024
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3 participants
@stanweer1 @lizliz @maxchumley