fix parallel = False

SuperBianC · Jan 16, 2024 · 523838c · 523838c
1 parent 4cc9c72
commit 523838c
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/scMulan/scMulan.py b/scMulan/scMulan.py
@@ -213,8 +213,8 @@ def get_cell_types_and_embds_for_adata(self, parallel = False, n_process = None,
             results = self.process_data_in_parallel(self.cell_type_and_embd_process_subdata, n_process, save_dir)
         else:
             results = []
-            for i in tqdm(range(self.adata.n_obs), desc="⏳ Collecting cell embeddings for each cell"):
-                ct, hidden = self.cell_type_and_embd_process_subdata(i, self.adata_matrix, **kwargs)
+            for idx in tqdm(self.adata.obs_names, desc="⏳ Collecting cell embeddings for each cell"):
+                ct, hidden = self.get_cell_type_and_embd(idx, self.adata_matrix, **kwargs)
                 results.append([ct, hidden])
 
         cell_types = [pair[0] for pair in results]