Feat/compositon/additonal pathway syntax

[jdcpni]

• pathway.py:
  Pathway(): figure with examples of specifications added to docstring

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This PR causes the following changes to the html docs (ubuntu-latest-3.7-x64):

diff -r docs-base/Pathway.html docs-head/Pathway.html
338a339,361
> <div class="line-block">
> <div class="line"><br /></div>
> </div>
> <blockquote>
> <div><figure class="align-default" id="id6">
> <a class="reference internal image-reference" href="_images/Pathways_fig.svg"><img alt="_images/Pathways_fig.svg" src="_images/Pathways_fig.svg" /></a>
> <figcaption>
> <p><span class="caption-text"><strong>Examples of Pathway specifications.</strong>  <em>i)</em> Set of <a class="reference internal" href="Composition.html#composition-nodes"><span class="std std-ref">Nodes</span></a>: each is treated as a
> <a class="reference internal" href="Composition.html#psyneulink.core.compositions.composition.NodeRole.SINGLETON" title="psyneulink.core.compositions.composition.NodeRole.SINGLETON"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">SINGLETON</span></code></a> within a single Pathway. <em>ii)</em> List of Nodes: forms a sequential Pathway.
> <em>iii)</em> Set followed by a list:  forms a divergent Pathway.  <em>iv)</em> Set of Nodes followed by a single Node:
> forms a convergent Pathway. <em>v)</em> Two lists and two single Node:  Forms two parallel pathway and a pair of
> <a class="reference internal" href="Composition.html#psyneulink.core.compositions.composition.NodeRole.SINGLETON" title="psyneulink.core.compositions.composition.NodeRole.SINGLETON"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">SINGLETON</span></code></a>s.  <em>vi)</em> Set of Nodes followed by Projection and two Nodes: since the
> set with the Projection does not contain a default Projection specification, no Projections are
> <em>automatically</em> created between the Nodes in the preceding entry (<code class="docutils literal notranslate"><span class="pre">A</span></code> or <code class="docutils literal notranslate"><span class="pre">B</span></code>) and the following one
> (<code class="docutils literal notranslate"><span class="pre">C</span></code>), so <code class="docutils literal notranslate"><span class="pre">A</span></code> is a <a class="reference internal" href="Composition.html#psyneulink.core.compositions.composition.NodeRole.SINGLETON" title="psyneulink.core.compositions.composition.NodeRole.SINGLETON"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">SINGLETON</span></code></a>;  however, since <code class="docutils literal notranslate"><span class="pre">B</span></code> is the the <a class="reference internal" href="MappingProjection.html#psyneulink.core.components.projections.pathway.mappingprojection.MappingProjection.sender" title="psyneulink.core.components.projections.pathway.mappingprojection.MappingProjection.sender"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">sender</span></code></a> of the specified Projection, it projects to <code class="docutils literal notranslate"><span class="pre">D</span></code>; since <code class="docutils literal notranslate"><span class="pre">C</span></code> is followed by
> <code class="docutils literal notranslate"><span class="pre">D</span></code> in the list, it too projects to <code class="docutils literal notranslate"><span class="pre">D</span></code>.  <em>vii)</em> A Node followed by a set of Nodes, and then another
> Node: forms a divergent then convergent Pathway.  <em>viii)</em> A set followed by a Node and then a set:  forms a
> convergent then divergent Pathway.  <em>ix)</em>  A Node by a Node that is a <a class="reference internal" href="Composition.html#composition-nested"><span class="std std-ref">nested Composition</span></a>
> that has a set of Nodes, and then another Node in the outer Comopsition:  forms a Pathway similar in
> configuration to <em>vii</em>.</span><a class="headerlink" href="#id6" title="Permalink to this image">¶</a></p>
> </figcaption>
> </figure>
> </div></blockquote>
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diff -r docs-base/searchindex.js docs-head/searchindex.js
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[github-actions]

This PR causes the following changes to the html docs (ubuntu-latest-3.7-x64):

diff -r docs-base/Pathway.html docs-head/Pathway.html
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< <p>Only a <em>set</em> can be used to specify multiple Nodes for a given entry in a Pathway; a <em>list</em> can <em>note</em> be used
---
> <p>Only a <em>set</em> can be used to specify multiple Nodes for a given entry in a Pathway; a <em>list</em> can <em>not</em> be used
304c304
< <div><div class="admonition note">
---
> <div><div class="admonition note" id="pathway-projection-list">
338a339,368
> <div class="line-block">
> <div class="line"><br /></div>
> </div>
> <blockquote>
> <div><figure class="align-default" id="id6">
> <a class="reference internal image-reference" href="_images/Pathways_fig.svg"><img alt="_images/Pathways_fig.svg" src="_images/Pathways_fig.svg" /></a>
> <figcaption>
> <p><span class="caption-text"><strong>Examples of Pathway specifications</strong> (including in the <strong>pathways</strong> argument of a <a class="reference internal" href="Composition.html"><span class="doc">Composition</span></a>. <em>i)</em> Set
> of <a class="reference internal" href="Composition.html#composition-nodes"><span class="std std-ref">Nodes</span></a>: each is treated as a <a class="reference internal" href="Composition.html#psyneulink.core.compositions.composition.NodeRole.SINGLETON" title="psyneulink.core.compositions.composition.NodeRole.SINGLETON"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">SINGLETON</span></code></a> within a single Pathway.
> <em>ii)</em> List of Nodes: forms a sequential Pathway. <em>iii)</em> Single Node followed by a set:  one to many mapping.
> <em>iv)</em> Set followed by a single Node: many to one mapping. <em>v)</em> Set followed by a set: many to many mapping.
> <em>vi)</em> Set followed by a list: because there is a list in the specification (<code class="docutils literal notranslate"><span class="pre">[C,D]</span></code>) all other entries are
> also treated as parallel Pathways, so <code class="docutils literal notranslate"><span class="pre">A</span></code> and <code class="docutils literal notranslate"><span class="pre">B</span></code> in the set are <a class="reference internal" href="Composition.html#psyneulink.core.compositions.composition.NodeRole.SINGLETON" title="psyneulink.core.compositions.composition.NodeRole.SINGLETON"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">SINGLETON</span></code></a>s.
> <em>vii)</em> Set of Projections intercolated between two sets of Nodes:  since the set of Projections does not
> include any involving <code class="docutils literal notranslate"><span class="pre">B</span></code> or <code class="docutils literal notranslate"><span class="pre">E</span></code> nor a default Projection specification, they are treated as <a class="reference internal" href="Composition.html#psyneulink.core.compositions.composition.NodeRole.SINGLETON" title="psyneulink.core.compositions.composition.NodeRole.SINGLETON"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">SINGLETON</span></code></a>s (compare with <em>x</em>). <em>viii)</em> Set followed by a Node and then a set:  many to one to
> many mapping. <em>ix)</em> Node followed by one that is a <a class="reference internal" href="Composition.html#composition-nested"><span class="std std-ref">nested Composition</span></a> then another Node:
> one to many to one mapping. <em>x)</em> Set followed by a list of Projections then another set: since the list of
> Projections contains a default Projection specification (<code class="docutils literal notranslate"><span class="pre">matrix</span></code>) Projections are created between all
> pairings of nodes in the sets that precede and follow the list (compare with <em>vii</em>); note that the Projections
> must be specified in a list because the matrix is a list (or array), which cannot be included in a set (see
> <a class="reference internal" href="#pathway-projection-list"><span class="std std-ref">note</span></a> above).</span><a class="headerlink" href="#id6" title="Permalink to this image">¶</a></p>
> <div class="legend">
> <div class="technical-note docutils container">
> <p>The full code for the examples above can be found in <code class="xref any docutils literal notranslate"><span class="pre">test_pathways_examples</span></code>,
> although some have been graphically rearranged for illustrative purposes.</p>
> </div>
> </div>
> </figcaption>
> </figure>
> </div></blockquote>
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This PR causes the following changes to the html docs (ubuntu-latest-3.7-x64):

diff -r docs-base/Pathway.html docs-head/Pathway.html
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< <div><div class="admonition note">
---
> <div><div class="admonition note" id="pathway-projection-list-note">
285,286c285,288
< <p>Only a <em>set</em> can be used to specify multiple Nodes for a given entry in a Pathway; a <em>list</em> can <em>note</em> be used
< for this purpose, as a list containing Nodes is always interpreted as a Pathway, and Pathways cannot be nested.</p>
---
> <p>Only a <em>set</em> can be used to specify multiple Nodes for a given entry in a Pathway; a <em>list</em> can <em>not</em> be used
> for this purpose, as a list containing Nodes is always interpreted as a Pathway. If a list <em>is</em> included in a
> Pathway specification, then it and all other entries are considered as separate, parallel Pathways (see
> example <em>vii</em> in the <a class="reference internal" href="#pathway-figure"><span class="std std-ref">figure</span></a> below).</p>
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< <div><div class="admonition note">
---
> <div><div class="admonition note" id="pathway-projection-matrix-note">
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> <div class="line-block">
> <div class="line"><br /></div>
> </div>
> <blockquote>
> <div><figure class="align-default" id="id6">
> <span id="pathway-figure"></span><a class="reference internal image-reference" href="_images/Pathways_fig.svg"><img alt="_images/Pathways_fig.svg" src="_images/Pathways_fig.svg" /></a>
> <figcaption>
> <p><span class="caption-text"><strong>Examples of Pathway specifications</strong> (including in the <strong>pathways</strong> argument of a <a class="reference internal" href="Composition.html"><span class="doc">Composition</span></a>. <em>i)</em> Set
> of <a class="reference internal" href="Composition.html#composition-nodes"><span class="std std-ref">Nodes</span></a>: each is treated as a <a class="reference internal" href="Composition.html#psyneulink.core.compositions.composition.NodeRole.SINGLETON" title="psyneulink.core.compositions.composition.NodeRole.SINGLETON"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">SINGLETON</span></code></a> within a single Pathway.
> <em>ii)</em> List of Nodes: forms a sequential Pathway. <em>iii)</em> Single Node followed by a set:  one to many mapping.
> <em>iv)</em> Set followed by a single Node: many to one mapping. <em>v)</em> Set followed by a set: many to many mapping.
> <em>vi)</em> Set followed by a list: because there is a list in the specification (<code class="docutils literal notranslate"><span class="pre">[C,D]</span></code>) all other entries are
> also treated as parallel Pathways (see <a class="reference internal" href="#pathway-projection-list-note"><span class="std std-ref">note</span></a> above), so <code class="docutils literal notranslate"><span class="pre">A</span></code> and <code class="docutils literal notranslate"><span class="pre">B</span></code> in the
> set are <a class="reference internal" href="Composition.html#psyneulink.core.compositions.composition.NodeRole.SINGLETON" title="psyneulink.core.compositions.composition.NodeRole.SINGLETON"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">SINGLETON</span></code></a>s. <em>vii)</em> Set of Projections intercolated between two sets of Nodes:
> since the set of Projections does not include any involving <code class="docutils literal notranslate"><span class="pre">B</span></code> or <code class="docutils literal notranslate"><span class="pre">E</span></code> nor a default Projection specification,
> they are treated as <a class="reference internal" href="Composition.html#psyneulink.core.compositions.composition.NodeRole.SINGLETON" title="psyneulink.core.compositions.composition.NodeRole.SINGLETON"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">SINGLETON</span></code></a>s (compare with <em>x</em>). <em>viii)</em> Set followed by a Node and
> then a set:  many to one to many mapping. <em>ix)</em> Node followed by one that is a <a class="reference internal" href="Composition.html#composition-nested"><span class="std std-ref">nested Composition</span></a> then another Node: one to many to one mapping. <em>x)</em> Set followed by a list of Projections
> then another set: since the list of Projections contains a default Projection specification (<code class="docutils literal notranslate"><span class="pre">matrix</span></code>)
> Projections are created between all pairings of nodes in the sets that precede and follow the list (compare with
> <em>vii</em>); note that the Projections must be specified in a list because the matrix is a list (or array), which
> cannot be included in a set (see <a class="reference internal" href="#pathway-projection-matrix-note"><span class="std std-ref">note</span></a> above).</span><a class="headerlink" href="#id6" title="Permalink to this image">¶</a></p>
> <div class="legend">
> <div class="technical-note docutils container">
> <p>The full code for the examples above can be found in <code class="xref any docutils literal notranslate"><span class="pre">test_pathways_examples</span></code>,
> although some have been graphically rearranged for illustrative purposes.</p>
> </div>
> </div>
> </figcaption>
> </figure>
> </div></blockquote>
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diff -r docs-base/searchindex.js docs-head/searchindex.js
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...

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This PR causes the following changes to the html docs (ubuntu-latest-3.7-x64):

diff -r docs-base/Pathway.html docs-head/Pathway.html
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< <div><div class="admonition note">
---
> <div><div class="admonition note" id="pathway-projection-list-note">
285,286c285,288
< <p>Only a <em>set</em> can be used to specify multiple Nodes for a given entry in a Pathway; a <em>list</em> can <em>note</em> be used
< for this purpose, as a list containing Nodes is always interpreted as a Pathway, and Pathways cannot be nested.</p>
---
> <p>Only a <em>set</em> can be used to specify multiple Nodes for a given entry in a Pathway; a <em>list</em> can <em>not</em> be used
> for this purpose, as a list containing Nodes is always interpreted as a Pathway. If a list <em>is</em> included in a
> Pathway specification, then it and all other entries are considered as separate, parallel Pathways (see
> example <em>vii</em> in the <a class="reference internal" href="#pathway-figure"><span class="std std-ref">figure</span></a> below).</p>
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< <div><div class="admonition note">
---
> <div><div class="admonition note" id="pathway-projection-matrix-note">
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> <div class="line-block">
> <div class="line"><br /></div>
> </div>
> <blockquote>
> <div><figure class="align-default" id="id6">
> <span id="pathway-figure"></span><a class="reference internal image-reference" href="_images/Pathways_fig.svg"><img alt="_images/Pathways_fig.svg" src="_images/Pathways_fig.svg" /></a>
> <figcaption>
> <p><span class="caption-text"><strong>Examples of Pathway specifications</strong> (including in the <strong>pathways</strong> argument of a <a class="reference internal" href="Composition.html"><span class="doc">Composition</span></a>. <em>i)</em> Set
> of <a class="reference internal" href="Composition.html#composition-nodes"><span class="std std-ref">Nodes</span></a>: each is treated as a <a class="reference internal" href="Composition.html#psyneulink.core.compositions.composition.NodeRole.SINGLETON" title="psyneulink.core.compositions.composition.NodeRole.SINGLETON"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">SINGLETON</span></code></a> within a single Pathway.
> <em>ii)</em> List of Nodes: forms a sequential Pathway. <em>iii)</em> Single Node followed by a set:  one to many mapping.
> <em>iv)</em> Set followed by a single Node: many to one mapping. <em>v)</em> Set followed by a set: many to many mapping.
> <em>vi)</em> Set followed by a list: because there is a list in the specification (<code class="docutils literal notranslate"><span class="pre">[C,D]</span></code>) all other entries are
> also treated as parallel Pathways (see <a class="reference internal" href="#pathway-projection-list-note"><span class="std std-ref">note</span></a> above), so <code class="docutils literal notranslate"><span class="pre">A</span></code> and <code class="docutils literal notranslate"><span class="pre">B</span></code> in the
> set are <a class="reference internal" href="Composition.html#psyneulink.core.compositions.composition.NodeRole.SINGLETON" title="psyneulink.core.compositions.composition.NodeRole.SINGLETON"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">SINGLETON</span></code></a>s. <em>vii)</em> Set of Projections intercolated between two sets of Nodes:
> since the set of Projections does not include any involving <code class="docutils literal notranslate"><span class="pre">B</span></code> or <code class="docutils literal notranslate"><span class="pre">E</span></code> nor a default Projection specification,
> they are treated as <a class="reference internal" href="Composition.html#psyneulink.core.compositions.composition.NodeRole.SINGLETON" title="psyneulink.core.compositions.composition.NodeRole.SINGLETON"><code class="xref any py py-attr docutils literal notranslate"><span class="pre">SINGLETON</span></code></a>s (compare with <em>x</em>). <em>viii)</em> Set followed by a Node and
> then a set:  many to one to many mapping. <em>ix)</em> Node followed by one that is a <a class="reference internal" href="Composition.html#composition-nested"><span class="std std-ref">nested Composition</span></a> then another Node: one to many to one mapping. <em>x)</em> Set followed by a list of Projections
> then another set: since the list of Projections contains a default Projection specification (<code class="docutils literal notranslate"><span class="pre">matrix</span></code>)
> Projections are created between all pairings of nodes in the sets that precede and follow the list (compare with
> <em>vii</em>); note that the Projections must be specified in a list because the matrix is a list (or array), which
> cannot be included in a set (see <a class="reference internal" href="#pathway-projection-matrix-note"><span class="std std-ref">note</span></a> above).</span><a class="headerlink" href="#id6" title="Permalink to this image">¶</a></p>
> <div class="legend">
> <div class="technical-note docutils container">
> <p>The full code for the examples above can be found in <code class="xref any docutils literal notranslate"><span class="pre">test_pathways_examples</span></code>,
> although some have been graphically rearranged for illustrative purposes.</p>
> </div>
> </div>
> </figcaption>
> </figure>
> </div></blockquote>
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diff -r docs-base/searchindex.js docs-head/searchindex.js
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...

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