Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Minimal examples of data structures and algorithms in Python

submit jobs to slurm with quick-and-dirty python

Simple command-line utility to convert CSV files to searchable and sortable HTML table.

This Snakemake pipeline implements the GATK best-practices workflow

Tutorial with snakemake and Scientific Filesystem

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Never use print for debugging again

Performant Pythonic GenomicRanges

Comprehensive Python Cheatsheet

Suite of tools for use in genome assembly and consensus. Work in progress.

Benchmark MinION assembler pipelines and publish your results in a heartbeat!

Master the command line, in one page

🔬 Path to a free self-taught education in Bioinformatics!

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

The essential Python list

Applied Computational Genomics Course at UU: Spring 2020

BWK awk modified for biological data

Useful bash one-liners for bioinformatics.

Library of snakemake rules.

Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.

Cool open source projects. Choose your project and get involved in Open Source development now.

A Python framework for structural systems biology