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dataprofessor authored Apr 6, 2020
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240 changes: 240 additions & 0 deletions python/google_colab_install_conda.ipynb
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{
"nbformat": 4,
"nbformat_minor": 0,
"metadata": {
"colab": {
"name": "conda-on-google-colab.ipynb",
"provenance": [],
"collapsed_sections": []
},
"kernelspec": {
"name": "python3",
"display_name": "Python 3"
}
},
"cells": [
{
"cell_type": "code",
"metadata": {
"id": "uyfFc8VufUyl",
"colab_type": "code",
"outputId": "36b12856-fc68-40b8-c203-0fcf8ab7244e",
"colab": {
"base_uri": "https://localhost:8080/",
"height": 1000
}
},
"source": [
"################################################################################\n",
"# INSTALL CONDA ON GOOGLE COLAB\n",
"################################################################################\n",
"! wget https://repo.anaconda.com/miniconda/Miniconda3-py37_4.8.2-Linux-x86_64.sh\n",
"! chmod +x Miniconda3-py37_4.8.2-Linux-x86_64.sh\n",
"! bash ./Miniconda3-py37_4.8.2-Linux-x86_64.sh -b -f -p /usr/local\n",
"import sys\n",
"sys.path.append('/usr/local/lib/python3.7/site-packages/')"
],
"execution_count": 0,
"outputs": [
{
"output_type": "stream",
"text": [
"--2020-04-06 03:23:37-- https://repo.anaconda.com/miniconda/Miniconda3-py37_4.8.2-Linux-x86_64.sh\n",
"Resolving repo.anaconda.com (repo.anaconda.com)... 104.16.130.3, 104.16.131.3, 2606:4700::6810:8303, ...\n",
"Connecting to repo.anaconda.com (repo.anaconda.com)|104.16.130.3|:443... connected.\n",
"HTTP request sent, awaiting response... 200 OK\n",
"Length: 85055499 (81M) [application/x-sh]\n",
"Saving to: ‘Miniconda3-py37_4.8.2-Linux-x86_64.sh.2’\n",
"\n",
"\r Miniconda 0%[ ] 0 --.-KB/s \r Miniconda3 48%[========> ] 39.24M 196MB/s \r Miniconda3- 93%[=================> ] 76.01M 189MB/s \rMiniconda3-py37_4.8 100%[===================>] 81.12M 187MB/s in 0.4s \n",
"\n",
"2020-04-06 03:23:37 (187 MB/s) - ‘Miniconda3-py37_4.8.2-Linux-x86_64.sh.2’ saved [85055499/85055499]\n",
"\n",
"PREFIX=/usr/local\n",
"Unpacking payload ...\n",
"Collecting package metadata (current_repodata.json): - \b\b\\ \b\bdone\n",
"Solving environment: / \b\b- \b\b\\ \n",
"The environment is inconsistent, please check the package plan carefully\n",
"The following packages are causing the inconsistency:\n",
"\n",
" - defaults/linux-64::urllib3==1.25.8=py37_0\n",
" - defaults/linux-64::ruamel_yaml==0.15.87=py37h7b6447c_0\n",
" - defaults/linux-64::pyopenssl==19.1.0=py37_0\n",
" - defaults/linux-64::pysocks==1.7.1=py37_0\n",
" - defaults/linux-64::six==1.14.0=py37_0\n",
" - defaults/linux-64::setuptools==45.2.0=py37_0\n",
" - defaults/linux-64::idna==2.8=py37_0\n",
" - defaults/noarch::tqdm==4.42.1=py_0\n",
" - defaults/linux-64::asn1crypto==1.3.0=py37_0\n",
" - defaults/linux-64::cffi==1.14.0=py37h2e261b9_0\n",
" - defaults/linux-64::wheel==0.34.2=py37_0\n",
" - defaults/linux-64::conda-package-handling==1.6.0=py37h7b6447c_0\n",
" - defaults/linux-64::pip==20.0.2=py37_1\n",
" - defaults/linux-64::cryptography==2.8=py37h1ba5d50_0\n",
" - defaults/linux-64::python==3.7.6=h0371630_2\n",
" - defaults/linux-64::pycparser==2.19=py37_0\n",
" - defaults/linux-64::pycosat==0.6.3=py37h7b6447c_0\n",
" - defaults/linux-64::requests==2.22.0=py37_1\n",
" - defaults/linux-64::chardet==3.0.4=py37_1003\n",
"\b\b| \b\b/ \b\bdone\n",
"\n",
"## Package Plan ##\n",
"\n",
" environment location: /usr/local\n",
"\n",
" added / updated specs:\n",
" - _libgcc_mutex==0.1=main\n",
" - asn1crypto==1.3.0=py37_0\n",
" - ca-certificates==2020.1.1=0\n",
" - certifi==2019.11.28=py37_0\n",
" - cffi==1.14.0=py37h2e261b9_0\n",
" - chardet==3.0.4=py37_1003\n",
" - conda-package-handling==1.6.0=py37h7b6447c_0\n",
" - conda==4.8.2=py37_0\n",
" - cryptography==2.8=py37h1ba5d50_0\n",
" - idna==2.8=py37_0\n",
" - ld_impl_linux-64==2.33.1=h53a641e_7\n",
" - libedit==3.1.20181209=hc058e9b_0\n",
" - libffi==3.2.1=hd88cf55_4\n",
" - libgcc-ng==9.1.0=hdf63c60_0\n",
" - libstdcxx-ng==9.1.0=hdf63c60_0\n",
" - ncurses==6.2=he6710b0_0\n",
" - openssl==1.1.1d=h7b6447c_4\n",
" - pip==20.0.2=py37_1\n",
" - pycosat==0.6.3=py37h7b6447c_0\n",
" - pycparser==2.19=py37_0\n",
" - pyopenssl==19.1.0=py37_0\n",
" - pysocks==1.7.1=py37_0\n",
" - python==3.7.6=h0371630_2\n",
" - readline==7.0=h7b6447c_5\n",
" - requests==2.22.0=py37_1\n",
" - ruamel_yaml==0.15.87=py37h7b6447c_0\n",
" - setuptools==45.2.0=py37_0\n",
" - six==1.14.0=py37_0\n",
" - sqlite==3.31.1=h7b6447c_0\n",
" - tk==8.6.8=hbc83047_0\n",
" - tqdm==4.42.1=py_0\n",
" - urllib3==1.25.8=py37_0\n",
" - wheel==0.34.2=py37_0\n",
" - xz==5.2.4=h14c3975_4\n",
" - yaml==0.1.7=had09818_2\n",
" - zlib==1.2.11=h7b6447c_3\n",
"\n",
"\n",
"The following NEW packages will be INSTALLED:\n",
"\n",
" certifi pkgs/main/linux-64::certifi-2019.11.28-py37_0\n",
" conda pkgs/main/linux-64::conda-4.8.2-py37_0\n",
" openssl pkgs/main/linux-64::openssl-1.1.1d-h7b6447c_4\n",
"\n",
"\n",
"Preparing transaction: \\ \b\bdone\n",
"Executing transaction: / \b\b- \b\bdone\n",
"installation finished.\n",
"WARNING:\n",
" You currently have a PYTHONPATH environment variable set. This may cause\n",
" unexpected behavior when running the Python interpreter in Miniconda3.\n",
" For best results, please verify that your PYTHONPATH only points to\n",
" directories of packages that are compatible with the Python interpreter\n",
" in Miniconda3: /usr/local\n"
],
"name": "stdout"
}
]
},
{
"cell_type": "code",
"metadata": {
"id": "QD319lDvf6Xp",
"colab_type": "code",
"outputId": "71cc1953-4fd9-4f85-fc0a-5a3f7e7688bd",
"colab": {
"base_uri": "https://localhost:8080/",
"height": 996
}
},
"source": [
"! conda install -c rdkit rdkit -y"
],
"execution_count": 0,
"outputs": [
{
"output_type": "stream",
"text": [
"Collecting package metadata (current_repodata.json): - \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\bdone\n",
"Solving environment: - \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\bfailed with initial frozen solve. Retrying with flexible solve.\n",
"Solving environment: / \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\bfailed with repodata from current_repodata.json, will retry with next repodata source.\n",
"Collecting package metadata (repodata.json): - \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\bdone\n",
"Solving environment: | \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\bdone\n",
"\n",
"## Package Plan ##\n",
"\n",
" environment location: /usr/local\n",
"\n",
" added / updated specs:\n",
" - rdkit\n",
"\n",
"\n",
"The following NEW packages will be INSTALLED:\n",
"\n",
" blas pkgs/main/linux-64::blas-1.0-mkl\n",
" bzip2 pkgs/main/linux-64::bzip2-1.0.8-h7b6447c_0\n",
" cairo pkgs/main/linux-64::cairo-1.14.12-h8948797_3\n",
" fontconfig pkgs/main/linux-64::fontconfig-2.13.0-h9420a91_0\n",
" freetype pkgs/main/linux-64::freetype-2.9.1-h8a8886c_1\n",
" glib pkgs/main/linux-64::glib-2.63.1-h5a9c865_0\n",
" icu pkgs/main/linux-64::icu-58.2-h9c2bf20_1\n",
" intel-openmp pkgs/main/linux-64::intel-openmp-2020.0-166\n",
" jpeg pkgs/main/linux-64::jpeg-9b-h024ee3a_2\n",
" libboost pkgs/main/linux-64::libboost-1.67.0-h46d08c1_4\n",
" libgfortran-ng pkgs/main/linux-64::libgfortran-ng-7.3.0-hdf63c60_0\n",
" libpng pkgs/main/linux-64::libpng-1.6.37-hbc83047_0\n",
" libtiff pkgs/main/linux-64::libtiff-4.1.0-h2733197_0\n",
" libuuid pkgs/main/linux-64::libuuid-1.0.3-h1bed415_2\n",
" libxcb pkgs/main/linux-64::libxcb-1.13-h1bed415_1\n",
" libxml2 pkgs/main/linux-64::libxml2-2.9.9-hea5a465_1\n",
" mkl pkgs/main/linux-64::mkl-2020.0-166\n",
" mkl-service pkgs/main/linux-64::mkl-service-2.3.0-py37he904b0f_0\n",
" mkl_fft pkgs/main/linux-64::mkl_fft-1.0.15-py37ha843d7b_0\n",
" mkl_random pkgs/main/linux-64::mkl_random-1.1.0-py37hd6b4f25_0\n",
" numpy pkgs/main/linux-64::numpy-1.18.1-py37h4f9e942_0\n",
" numpy-base pkgs/main/linux-64::numpy-base-1.18.1-py37hde5b4d6_1\n",
" olefile pkgs/main/linux-64::olefile-0.46-py37_0\n",
" pandas pkgs/main/linux-64::pandas-1.0.3-py37h0573a6f_0\n",
" pcre pkgs/main/linux-64::pcre-8.43-he6710b0_0\n",
" pillow pkgs/main/linux-64::pillow-7.0.0-py37hb39fc2d_0\n",
" pixman pkgs/main/linux-64::pixman-0.38.0-h7b6447c_0\n",
" py-boost pkgs/main/linux-64::py-boost-1.67.0-py37h04863e7_4\n",
" python-dateutil pkgs/main/noarch::python-dateutil-2.8.1-py_0\n",
" pytz pkgs/main/noarch::pytz-2019.3-py_0\n",
" rdkit rdkit/linux-64::rdkit-2020.03.1.0-py37hc20afe1_1\n",
" zstd pkgs/main/linux-64::zstd-1.3.7-h0b5b093_0\n",
"\n",
"The following packages will be UPDATED:\n",
"\n",
" certifi 2019.11.28-py37_0 --> 2019.11.28-py37_1\n",
" conda 4.8.2-py37_0 --> 4.8.3-py37_0\n",
" openssl 1.1.1d-h7b6447c_4 --> 1.1.1f-h7b6447c_0\n",
"\n",
"\n",
"Proceed ([y]/n)? "
],
"name": "stdout"
}
]
},
{
"cell_type": "code",
"metadata": {
"id": "M8MeOz0miqJ1",
"colab_type": "code",
"colab": {}
},
"source": [
""
],
"execution_count": 0,
"outputs": []
}
]
}
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