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Julie Fabre edited this page Aug 4, 2024 · 28 revisions

Welcome to the bombcell 💣 wiki!

Bombcell is a powerful toolbox designed to evaluate the quality of recorded units and extract essential electrophysiological properties. It is specifically tailored for units recorded with Neuropixel probes (3A, 1.0, and 2.0) using SpikeGLX or OpenEphys and spike-sorted with Kilosort.

If you find Bombcell useful in your work, we kindly request that you cite:

Julie M.J. Fabre, Enny H. van Beest, Andrew J. Peters, Matteo Carandini, & Kenneth D. Harris. (2023). Bombcell: automated curation and cell classification of spike-sorted electrophysiology data. Zenodo. https://doi.org/10.5281/zenodo.8172821

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If you have any issues or suggestions please create a github issue by going to the "issues" tab and clicking on the green "new issue" button. Alternatively, you can email us: juliemfabre[at]gmail[dot]com.

Follow us on twitter: basal_gang for updates on bombcell.

Table of contents

Overview

Quality metrics

Ephys properties and classifying cells

Troubleshooting and other resources