Encoding models for fMRI implemented in tensorflow

a BIDS app for pseudo-anonymization of neuroimaging data

A neuroscience library for Python, intended to complement the existing nibabel library.

Code to convert Philips physiology files ("SCANPHYSLOG") to the BIDS-format, including (estimated) volume triggers.

prf fitting routines at Spinoza Centre for Neuroimaging

Tools for mesh surface-based operations

Computes n equally spaced offset surfaces between the white and pial surfaces with equal ratios between areas of successive surfaces, which samples the same layers in gyri and sulci.

Project management repository (primarily issues) for BIDS Extension Proposal 001

A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.

3D MRI data exploration and segmentation tool.

woof

BIDS app wrapping recon-all from FreeSurfer

A template for small scientific python projects

Processing tools for high-resolution neuroimaging

BAyesian Model-Building Interface (Bambi) in Python.

Data pipelines and analysis library for functional MRI

Interactive Reinforcement Learning in JavaScript

Bayesian Modeling and Probabilistic Programming in Python

A code-completion engine for Vim

A tool that bootstraps your dotfiles ⚡️

A Python module to analyze fMRI data using the 'in limbo'-approach and sandwich estimators

Clone of python-progressbar

A template Python project with a focus on best practices.

HRF estimation

Neuroimaging in Python FMRI analysis package

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

Hierarchical stop-signal model (Matzke et al, 2011) that allows estimation of SSRT and SSRT variability.

Quicklook plugin for ipython notebooks

HDDM is a python module that implements Hierarchical Bayesian parameter estimation of Drift Diffusion Models (via PyMC).