Skip to content

Commit

Permalink
update
Browse files Browse the repository at this point in the history
  • Loading branch information
@jtleek
jtleek committed May 5, 2014
1 parent 5b1b582 commit 90fe681
Show file tree
Hide file tree
Showing 40 changed files with 175 additions and 77 deletions.
2 changes: 1 addition & 1 deletion 08_PracticalMachineLearning/001predictionMotivation/index.Rmd
View file
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ framework : io2012 # {io2012, html5slides, shower, dzslides, ...}
highlighter : highlight.js # {highlight.js, prettify, highlight}
hitheme : tomorrow #
url:
lib: ../../libraries
lib: ../../librariesNew
assets: ../../assets
widgets : [mathjax] # {mathjax, quiz, bootstrap}
mode : selfcontained # {standalone, draft}
Expand Down
198 changes: 127 additions & 71 deletions 08_PracticalMachineLearning/001predictionMotivation/index.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -8,51 +8,46 @@
<meta name="generator" content="slidify" />
<meta name="apple-mobile-web-app-capable" content="yes">
<meta http-equiv="X-UA-Compatible" content="chrome=1">
<link rel="stylesheet" href="../../libraries/frameworks/io2012/css/default.css" media="all" >
<link rel="stylesheet" href="../../libraries/frameworks/io2012/phone.css"
<link rel="stylesheet" href="../../librariesNew/frameworks/io2012/css/default.css" media="all" >
<link rel="stylesheet" href="../../librariesNew/frameworks/io2012/css/phone.css"
media="only screen and (max-device-width: 480px)" >
<link rel="stylesheet" href="../../libraries/frameworks/io2012/css/slidify.css" >
<link rel="stylesheet" href="../../libraries/highlighters/highlight.js/css/tomorrow.css" />
<base target="_blank"> <!-- This amazingness opens all links in a new tab. -->
<script data-main="../../libraries/frameworks/io2012/js/slides"
src="../../libraries/frameworks/io2012/js/require-1.0.8.min.js">
<link rel="stylesheet" href="../../librariesNew/frameworks/io2012/css/slidify.css" >
<link rel="stylesheet" href="../../librariesNew/highlighters/highlight.js/css/tomorrow.css" />
<base target="_blank"> <!-- This amazingness opens all links in a new tab. -->

<!-- Grab CDN jQuery, fall back to local if offline -->
<script src="http://ajax.aspnetcdn.com/ajax/jQuery/jquery-1.7.min.js"></script>
<script>window.jQuery || document.write('<script src="../../librariesNew/widgets/quiz/js/jquery.js"><\/script>')</script>
<script data-main="../../librariesNew/frameworks/io2012/js/slides"
src="../../librariesNew/frameworks/io2012/js/require-1.0.8.min.js">
</script>

<link rel="stylesheet" href = "../../assets/css/custom.css">
<link rel="stylesheet" href = "../../assets/css/custom.css.BACKUP.546.css">
<link rel="stylesheet" href = "../../assets/css/custom.css.BASE.546.css">
<link rel="stylesheet" href = "../../assets/css/custom.css.LOCAL.546.css">
<link rel="stylesheet" href = "../../assets/css/custom.css.orig">
<link rel="stylesheet" href = "../../assets/css/custom.css.REMOTE.546.css">
<link rel="stylesheet" href = "../../assets/css/ribbons.css">


</head>
<body style="opacity: 0">
<slides class="layout-widescreen">

<!-- LOGO SLIDE -->
<!-- END LOGO SLIDE -->
<slide class="title-slide segue nobackground">
<aside class="gdbar">
<img src="../../assets/img/bloomberg_shield.png">
</aside>
<hgroup class="auto-fadein">
<h1>Motivation and pre-requisites</h1>
<h2></h2>
<p>Jeffrey Leek<br/>Johns Hopkins Bloomberg School of Public Health</p>
</hgroup>
<article></article>
</slide>


<!-- TITLE SLIDE -->
<!-- Should I move this to a Local Layout File? -->
<slide class="title-slide segue nobackground">
<aside class="gdbar">
<img src="../../assets/img/bloomberg_shield.png">
</aside>
<hgroup class="auto-fadein">
<h1>Motivation and pre-requisites</h1>
<h2></h2>
<p>Jeffrey Leek<br/>Johns Hopkins Bloomberg School of Public Health</p>
</hgroup>
</slide>

<!-- SLIDES -->
<slide class="" id="slide-1" style="background:;">
<slide class="" id="slide-1" style="background:;">
<hgroup>
<h2>About this course</h2>
</hgroup>
<article>
<article data-timings="">
<ul>
<li>This course covers the basic ideas behind machine learning/prediction

Expand Down Expand Up @@ -80,11 +75,11 @@ <h2>About this course</h2>
<!-- Presenter Notes -->
</slide>

<slide class="" id="slide-2" style="background:;">
<slide class="" id="slide-2" style="background:;">
<hgroup>
<h2>Who predicts?</h2>
</hgroup>
<article>
<article data-timings="">
<ul>
<li>Local governments -&gt; pension payments</li>
<li>Google -&gt; whether you will click on an ad</li>
Expand All @@ -97,11 +92,11 @@ <h2>Who predicts?</h2>
<!-- Presenter Notes -->
</slide>

<slide class="" id="slide-3" style="background:;">
<slide class="" id="slide-3" style="background:;">
<hgroup>
<h2>Why predict? Glory!</h2>
</hgroup>
<article>
<article data-timings="">
<p><img class=center src=../../assets/img/08_PredictionAndMachineLearning/volinsky.png height=450></p>

<p><a href="http://www.zimbio.com/photos/Chris+Volinsky">http://www.zimbio.com/photos/Chris+Volinsky</a></p>
Expand All @@ -110,11 +105,11 @@ <h2>Why predict? Glory!</h2>
<!-- Presenter Notes -->
</slide>

<slide class="" id="slide-4" style="background:;">
<slide class="" id="slide-4" style="background:;">
<hgroup>
<h2>Why predict? Riches!</h2>
</hgroup>
<article>
<article data-timings="">
<p><img class=center src=../../assets/img/08_PredictionAndMachineLearning/heritage.png height=450></p>

<p><a href="http://www.heritagehealthprize.com/c/hhp">http://www.heritagehealthprize.com/c/hhp</a></p>
Expand All @@ -123,11 +118,11 @@ <h2>Why predict? Riches!</h2>
<!-- Presenter Notes -->
</slide>

<slide class="" id="slide-5" style="background:;">
<slide class="" id="slide-5" style="background:;">
<hgroup>
<h2>Why predict? For sport!</h2>
</hgroup>
<article>
<article data-timings="">
<p><img class=center src=../../assets/img/08_PredictionAndMachineLearning/kaggle.png height=350></p>

<p><a href="http://www.kaggle.com/">http://www.kaggle.com/</a></p>
Expand All @@ -136,11 +131,11 @@ <h2>Why predict? For sport!</h2>
<!-- Presenter Notes -->
</slide>

<slide class="" id="slide-6" style="background:;">
<slide class="" id="slide-6" style="background:;">
<hgroup>
<h2>Why predict? To save lives!</h2>
</hgroup>
<article>
<article data-timings="">
<p><img class=center src=../../assets/img/08_PredictionAndMachineLearning/oncotype.png height=350></p>

<p><a href="http://www.oncotypedx.com/en-US/Home">http://www.oncotypedx.com/en-US/Home</a></p>
Expand All @@ -149,11 +144,11 @@ <h2>Why predict? To save lives!</h2>
<!-- Presenter Notes -->
</slide>

<slide class="" id="slide-7" style="background:;">
<slide class="" id="slide-7" style="background:;">
<hgroup>
<h2>A useful (if a bit advanced) book</h2>
</hgroup>
<article>
<article data-timings="">
<p><img class=center src=../../assets/img/08_PredictionAndMachineLearning/elemlearn.png height=350></p>

<p><a href="http://statweb.stanford.edu/%7Etibs/ElemStatLearn/">The elements of statistical learning</a></p>
Expand All @@ -162,11 +157,11 @@ <h2>A useful (if a bit advanced) book</h2>
<!-- Presenter Notes -->
</slide>

<slide class="" id="slide-8" style="background:;">
<slide class="" id="slide-8" style="background:;">
<hgroup>
<h2>A useful package</h2>
</hgroup>
<article>
<article data-timings="">
<p><img class=center src=../../assets/img/08_PredictionAndMachineLearning/caret.png height=350></p>

<p><a href="http://caret.r-forge.r-project.org/">http://caret.r-forge.r-project.org/</a></p>
Expand All @@ -175,11 +170,11 @@ <h2>A useful package</h2>
<!-- Presenter Notes -->
</slide>

<slide class="" id="slide-9" style="background:;">
<slide class="" id="slide-9" style="background:;">
<hgroup>
<h2>Machine learning (more advanced material)</h2>
</hgroup>
<article>
<article data-timings="">
<p><img class=center src=../../assets/img/08_PredictionAndMachineLearning/machinelearning.png height=350></p>

<p><a href="https://www.coursera.org/course/ml">https://www.coursera.org/course/ml</a></p>
Expand All @@ -188,11 +183,11 @@ <h2>Machine learning (more advanced material)</h2>
<!-- Presenter Notes -->
</slide>

<slide class="" id="slide-10" style="background:;">
<slide class="" id="slide-10" style="background:;">
<hgroup>
<h2>Even more resources</h2>
</hgroup>
<article>
<article data-timings="">
<ul>
<li><a href="http://www.quora.com/Machine-Learning/What-are-some-good-resources-for-learning-about-machine-learning-Why">List of machine learning resources on Quora</a></li>
<li><a href="http://www.sciencemag.org/site/feature/data/compsci/machine_learning.xhtml">List of machine learning resources from Science</a></li>
Expand All @@ -207,34 +202,95 @@ <h2>Even more resources</h2>

<slide class="backdrop"></slide>
</slides>

<!--[if IE]>
<div class="pagination pagination-small" id='io2012-ptoc' style="display:none;">
<ul>
<li>
<a href="#" target="_self" rel='tooltip'
data-slide=1 title='About this course'>
1
</a>
</li>
<li>
<a href="#" target="_self" rel='tooltip'
data-slide=2 title='Who predicts?'>
2
</a>
</li>
<li>
<a href="#" target="_self" rel='tooltip'
data-slide=3 title='Why predict? Glory!'>
3
</a>
</li>
<li>
<a href="#" target="_self" rel='tooltip'
data-slide=4 title='Why predict? Riches!'>
4
</a>
</li>
<li>
<a href="#" target="_self" rel='tooltip'
data-slide=5 title='Why predict? For sport!'>
5
</a>
</li>
<li>
<a href="#" target="_self" rel='tooltip'
data-slide=6 title='Why predict? To save lives!'>
6
</a>
</li>
<li>
<a href="#" target="_self" rel='tooltip'
data-slide=7 title='A useful (if a bit advanced) book'>
7
</a>
</li>
<li>
<a href="#" target="_self" rel='tooltip'
data-slide=8 title='A useful package'>
8
</a>
</li>
<li>
<a href="#" target="_self" rel='tooltip'
data-slide=9 title='Machine learning (more advanced material)'>
9
</a>
</li>
<li>
<a href="#" target="_self" rel='tooltip'
data-slide=10 title='Even more resources'>
10
</a>
</li>
</ul>
</div> <!--[if IE]>
<script
src="http://ajax.googleapis.com/ajax/libs/chrome-frame/1/CFInstall.min.js">
</script>
<script>CFInstall.check({mode: 'overlay'});</script>
<![endif]-->
</body>
<!-- Grab CDN jQuery, fall back to local if offline -->
<script src="http://ajax.aspnetcdn.com/ajax/jQuery/jquery-1.7.min.js"></script>
<script>window.jQuery || document.write('<script src="../../libraries/widgets/quiz/js/jquery-1.7.min.js"><\/script>')</script>
<!-- Load Javascripts for Widgets -->
<!-- MathJax: Fall back to local if CDN offline but local image fonts are not supported (saves >100MB) -->
<script type="text/x-mathjax-config">
MathJax.Hub.Config({
tex2jax: {
inlineMath: [['$','$'], ['\\(','\\)']],
processEscapes: true
}
});
</script>
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/2.0-latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
<!-- <script src="https://c328740.ssl.cf1.rackcdn.com/mathjax/2.0-latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
</script> -->
<script>window.MathJax || document.write('<script type="text/x-mathjax-config">MathJax.Hub.Config({"HTML-CSS":{imageFont:null}});<\/script><script src="../../libraries/widgets/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML"><\/script>')
<!-- Load Javascripts for Widgets -->

<!-- MathJax: Fall back to local if CDN offline but local image fonts are not supported (saves >100MB) -->
<script type="text/x-mathjax-config">
MathJax.Hub.Config({
tex2jax: {
inlineMath: [['$','$'], ['\\(','\\)']],
processEscapes: true
}
});
</script>
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/2.0-latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
<!-- <script src="https://c328740.ssl.cf1.rackcdn.com/mathjax/2.0-latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
</script> -->
<script>window.MathJax || document.write('<script type="text/x-mathjax-config">MathJax.Hub.Config({"HTML-CSS":{imageFont:null}});<\/script><script src="../../librariesNew/widgets/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML"><\/script>')
</script>
<!-- LOAD HIGHLIGHTER JS FILES -->
<script src="../../libraries/highlighters/highlight.js/highlight.pack.js"></script>
<script>hljs.initHighlightingOnLoad();</script>
<!-- DONE LOADING HIGHLIGHTER JS FILES -->
</html>
<script src="../../librariesNew/highlighters/highlight.js/highlight.pack.js"></script>
<script>hljs.initHighlightingOnLoad();</script>
<!-- DONE LOADING HIGHLIGHTER JS FILES -->

</html>
2 changes: 1 addition & 1 deletion 08_PracticalMachineLearning/001predictionMotivation/index.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ framework : io2012 # {io2012, html5slides, shower, dzslides, ...}
highlighter : highlight.js # {highlight.js, prettify, highlight}
hitheme : tomorrow #
url:
lib: ../../libraries
lib: ../../librariesNew
assets: ../../assets
widgets : [mathjax] # {mathjax, quiz, bootstrap}
mode : selfcontained # {standalone, draft}
Expand Down
Binary file added 08_PracticalMachineLearning/lectures/001predictionMotivation.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/002whatIsPrediction.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/003relativeImportance.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/004inOutSampleErrors.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/005predictionStudyDesign.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/006typesOfErrors.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/007receiverOperatingCharacteristic.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/008crossValidation.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/009whatData.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/010caretPackage.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/011dataSlicing.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/012trainOptions.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/013plottingPredictors.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/014basicPreprocessing.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/015covariateCreation.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/016preProcessingPCA.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/017predictingWithRegression.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/018predictingWithRegressionMC.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/019predictingWithTrees.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/020bagging.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/021randomForests.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/022boosting.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/023modelBasedPrediction.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/024regularizedRegression.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/025combiningPredictors.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/026unsupervisedPrediction.pdf
View file
Binary file not shown.
Binary file added 08_PracticalMachineLearning/lectures/027forecasting.pdf
View file
Binary file not shown.
28 changes: 28 additions & 0 deletions 08_PracticalMachineLearning/makefile
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
DELAY = 1000
RMD_FILES = $(wildcard */index.Rmd)
HTML_FILES = $(patsubst %.Rmd, %.html, $(RMD_FILES))
PDF_FILES = $(patsubst %.html, %.pdf, $(HTML_FILES))
PDF_FILES2 = $(patsubst %/index.pdf, lectures/%.pdf, $(PDF_FILES))

lectures: $(PDF_FILES2)
lectures/%.pdf: %/index.pdf
cp $< $@

files:
@echo $(RMD_FILES)
@echo $(HTML_FILES)
@echo $(PDF_FILES)

html: $(HTML_FILES)
pdf: $(PDF_FILES)
all: html pdf

zip: $(PDF_FILES)
zip all_pdf_files.zip $^

%/index.pdf: %/index.html
casperjs makepdf.js $< $@ $(DELAY)

%/index.html: %/index.Rmd
cd $(dir $<) && Rscript -e "slidify::slidify('index.Rmd')" && cd ..

10 changes: 10 additions & 0 deletions 08_PracticalMachineLearning/makepdf.js
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
var casper = require('casper').create({viewportSize:{width:1500,height:1000}});
var args = casper.cli.args;
var imgfile = (args[1] || Math.random().toString(36).slice(2))
casper.start(args[0], function() {
this.wait(args[2], function(){
this.captureSelector(imgfile, "slides");
});
});

casper.run();
Binary file added 09_DevelopingDataProducts/lectures/RPackages.pdf
View file
Binary file not shown.
Binary file added 09_DevelopingDataProducts/lectures/classes-methods.pdf
View file
Binary file not shown.
Binary file added 09_DevelopingDataProducts/lectures/googleVis.pdf
View file
Binary file not shown.
Binary file added 09_DevelopingDataProducts/lectures/manipulate.pdf
View file
Binary file not shown.
Binary file added 09_DevelopingDataProducts/lectures/rCharts.pdf
View file
Binary file not shown.
Binary file added 09_DevelopingDataProducts/lectures/shiny.pdf
View file
Binary file not shown.
Binary file added 09_DevelopingDataProducts/lectures/slidify.pdf
View file
Binary file not shown.
Loading

0 comments on commit 90fe681

Please sign in to comment.