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@DIAGNijmegen

Diagnostic Image Analysis Group

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  1. neural-odes-segmentation neural-odes-segmentation Public

    Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands

    Python 105 28

  2. StreamingCNN StreamingCNN Public

    To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …

    Jupyter Notebook 97 21

  3. pathology-whole-slide-data pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 91 27

  4. pathology-streaming-pipeline pathology-streaming-pipeline Public

    Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

    Python 75 10

  5. pathology-he-auto-augment pathology-he-auto-augment Public

    H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.

    Python 52 7

  6. pathology-hooknet pathology-hooknet Public

    Jupyter Notebook 51 10

Repositories

Showing 10 of 152 repositories
  • picai_labels Public

    Annotations for the PI-CAI Challenge: Public Training and Development Dataset

    DIAGNijmegen/picai_labels’s past year of commit activity
    47 23 0 0 Updated Sep 19, 2024
  • open-data-registry Public Forked from awslabs/open-data-registry

    A registry of publicly available datasets on AWS

    DIAGNijmegen/open-data-registry’s past year of commit activity
    Python 0 Apache-2.0 901 0 0 Updated Sep 19, 2024
  • website-content Public

    This repository stores all the content for the diag websites.

    DIAGNijmegen/website-content’s past year of commit activity
    TeX 6 MIT 73 29 (1 issue needs help) 13 Updated Sep 18, 2024
  • dinov2 Public Forked from clemsgrs/dinov2

    Adaption of DINOv2 for computational pathology

    DIAGNijmegen/dinov2’s past year of commit activity
    Python 0 773 0 0 Updated Sep 18, 2024
  • picai_prep Public

    Preprocessing 3D medical images and image archives —geared towards prostate cancer detection in MRI.

    DIAGNijmegen/picai_prep’s past year of commit activity
    Python 18 Apache-2.0 5 0 0 Updated Sep 18, 2024
  • rse-pyswot Public

    Python implementation of JetBrains/swot

    DIAGNijmegen/rse-pyswot’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Sep 17, 2024
  • dragon_baseline Public

    Baseline training algorithm for the DRAGON challenge (dragon.grand-challenge.org)

    DIAGNijmegen/dragon_baseline’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Sep 13, 2024
  • rse-grand-challenge-forge Public

    Generation of challenge packs

    DIAGNijmegen/rse-grand-challenge-forge’s past year of commit activity
    Python 0 Apache-2.0 0 3 0 Updated Sep 13, 2024
  • MultiStainDeepLearning Public Forked from AGFoersch/MultiStainDeepLearning

    Code from Foersch et al. (Under Construction / Development)

    DIAGNijmegen/MultiStainDeepLearning’s past year of commit activity
    Python 0 GPL-3.0 10 0 0 Updated Sep 10, 2024
  • dragon_prep Public

    Preprocessing scripts for the DRAGON benchmark

    DIAGNijmegen/dragon_prep’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Sep 10, 2024

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