Single cell RNA sequencing analysis course

Repo for Physalia course Analysis of Single Cell RNA-Seq data

Analysis of single cell RNA-seq data course

Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

Reanalyze of GSE111527 scRNA-seq data

extend functions to support Seurat

A compilation of R scripts used for an analysis of the first two scRNA-Seq runs of ST-EPN tumor samples from a mouse model in the LoTurco Lab at UConn.

Code for the data analyzing in mouse epididymis scRNA-seq project

This project involves the Deconvolution (Digital flow-cytometry) of mice whole liver. ScRNA-Seq analysis was performed using Seurat R package, RNA-Seq pipeline was performed with HISAT2 (Alignment)…

scRNA analysis codes

Scripts for analysis of Cengiz's scRNAseq samples of mouse hippocampal tissue for sham females/males, HiC females/males, and HiT females/males.

All datasets include analyzed scRNA-seq, peak files called from eCLIP-seq datasets, and spliced/unspliced readouts of single cell. And codes for reproducing main results of study

Scripts for analyzing feature expression in endothelial cell subsets (lymphatic, sinusoidal, blood) from mouse embryo scRNAseq datasets.

Analysis code for collaboration with the Kuo lab. Single-cell analysis of NDP KO mice w/ and w/ out L6-F4-2 therapeutic agent.

Codes for computational analysis of scRNA-seq data of mouse motor neurons

CTRL vs IR mouse salivary glands

scRNA-seq analysis of DN4 thymocytes from wild-type or Zfp335 conditional knock-out mice

Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data

Scripts for analysing single cell data from mouse ECs in different organs in obesity

Single Cell RNAseq Analysis of lung tissue in mice

Prion diseases are neurodegenerative disorders with long asymptomatic incubation periods, followed by a rapid progression of cognitive and functional decline culminating in death. The complexity of…

Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging” (on reviewing)

The integration of single cell rank-based gene set enrichment analysis

The integration of single cell rank-based gene set enrichment analysis

SIB course on single cell transcriptomics by mostly using the Seurat pipeline

This git repository contains all R codes used for single cell data analysis for our MPL-in-COVID-19 publication.

Methods for detecting doublets in single-cell sequencing data