The hail scripts in this repo can be used to pre-process variant callsets and export them to elasticsearch.
See hail_elasticsearch_pipelines/luigi_pipeline/README.md for details.
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hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
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CenterForMedicalGeneticsGhent/seqr-loading-pipelines
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hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
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