Skip to content
View AmandaBirmingham's full-sized avatar
8 followers · 0 following
  • University of California
  • San Diego

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Highlights

  • Pro

Block or report AmandaBirmingham

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

  • SARS-CoV-2_WasteWater_San-Diego Public

    Forked from andersen-lab/SARS-CoV-2_WasteWater_San-Diego
    Python Updated Sep 17, 2024

  • custom_metadata_generators Public

    Python Updated Sep 16, 2024

  • qiimp2 Public

    Python Updated Sep 16, 2024

  • fork_metagenomics_pooling_notebook Public

    Forked from biocore/metagenomics_pooling_notebook

    Jupyter notebooks to assist with sample processing

    Python MIT License Updated Sep 16, 2024

  • fork_mg-scripts_copy_sequences_branch Public

    Forked from charles-cowart/mg-scripts

    Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal

    Python BSD 3-Clause "New" or "Revised" License Updated Aug 2, 2024

  • fork_qp-knight-lab-processing Public

    Forked from qiita-spots/qp-knight-lab-processing
    Python BSD 3-Clause "New" or "Revised" License Updated Jul 22, 2024

  • pysyndna Public

    Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022

    Python Updated Jul 10, 2024

  • mopp Public

    Forked from sherlyn99/mopp

    Multi-Omics Processing Pipeline (MOPP)

    Python BSD 3-Clause "New" or "Revised" License Updated May 13, 2024

  • mali-dual-crispr-pipeline Public

    Forked from ucsd-ccbb/mali-dual-crispr-pipeline

    This repository contains code for the dual-CRISPR screen analysis pipeline developed to analyze results from the dual-CRISPR screening system set up by the labs of Dr. Prashant Mali and Dr. Trey Id…

    Python MIT License Updated Apr 1, 2024

  • q2-pysyndna Public

    QIIME 2 plugin for pysyndna functionality

    Python Updated Mar 27, 2024

  • q2-surpi Public

    Python BSD 3-Clause "New" or "Revised" License Updated Feb 20, 2024

  • C-VIEW-Currents Public

    An extension to the C-VIEW (COVID-19 VIral Epidemiology Workflow) pipeline that uses Freyja to identify variants and lineages prevalent in mixed-input samples like wastewater.

    Python 1 BSD 3-Clause "New" or "Revised" License Updated Jan 31, 2024

  • fork_qiime2 Public

    Forked from qiime2/qiime2

    Official repository for the QIIME 2 framework.

    Python BSD 3-Clause "New" or "Revised" License Updated Dec 15, 2023

  • q2cwl-fork Public

    Forked from qiime2/q2cwl

    Prototype interface for automatically generating CWL tools from QIIME 2 actions

    Python BSD 3-Clause "New" or "Revised" License Updated Aug 21, 2023

  • qadabra-fork Public

    Forked from biocore/qadabra

    Snakemake workflow for comparison of differential abundance ranks

    Python BSD 3-Clause "New" or "Revised" License Updated Aug 17, 2023

  • qiita Public

    Forked from qiita-spots/qiita

    Qiita - A multi-omics databasing effort

    Python BSD 3-Clause "New" or "Revised" License Updated Aug 14, 2023

  • inspectseq_metadata_validator Public

    Tools to validate InspectSeq metadata files for use in C-VIEW

    Python BSD 3-Clause "New" or "Revised" License Updated Feb 17, 2023

  • q2templater Public

    Forked from qiime2/q2galaxy

    Generate Galaxy tool descriptions automatically from QIIME 2 actions.

    Python BSD 3-Clause "New" or "Revised" License Updated Feb 23, 2022

  • qiimp Public

    Forked from ucsd-ccbb/qiimp

    Web application to collect metadata specifications from an experimenter and produce metadata input files with appropriate constraints

    Python Updated Nov 1, 2018

  • 2018-10-11-ucsdccbb Public

    Python Other Updated Oct 11, 2018

  • q2-diversity Public

    Forked from qiime2/q2-diversity
    Python BSD 3-Clause "New" or "Revised" License Updated Jun 1, 2018

  • labman Public

    Forked from biocore/LabControl

    lab manager for plate maps and sequence flows

    Python BSD 3-Clause "New" or "Revised" License Updated Jan 20, 2018