Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies

R package for semi-supervised single-cell data integration

One-step to Cluster and Visualize Gene Expression Matrix

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

Publication-ready volcano plots with enhanced colouring and labeling

Network representation of LDSC results

An R alternative to MetaXcan

R package to visualize gene expression data based on weighted kernel density estimation

VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a list of tissues / gwas traits of interest to complete the re…

CELLECT (CELL-type Expression-specific integration for Complex Traits)

CELLEX (CELL-type EXpression-specificity)

Code for generating figures for the manuscript

Automatically Select Heritable Confounders for Mendelian Randomization

sHDL

Codes and data used in nMAGMA, an approach to intergrate Hi-C, eQTL and gene networks inferred from WGCNA into original MAGMA annotation.

Trajectory-inference-based dynamic single-cell Mendelian randomization (ti-scMR)

Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.

Make LocusZoom-like plots with your own LD matrix.

Cytograph version used for adult human-brain analysis

Morphology-Enhanced Spatial Transcriptome Analysis Integrator

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

R package for tissue-specific gene enrichment

Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.

Draw phylogenetic trees of tumor evolution

Calling disease-related genes

R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"