Logging of system sensor specific for the RPI and sending them to a MQTT broker

R library for NMR/MS analyses. Workflow includes NMR data import & preprocessing, statistical modelling (PCA, O-PLS), met ID-ing, visualisation (ggplot2, plotly).. Critical functions implemented in…

Collection of modelling algorithms for NMR & MS data, including principal components analysis (PLS), (orthogonal) partial least squares (O-PLS, PLS), non-negative least squares regression (NNLSQ). …

Open-source database for in-vivo brain MRS results

Code used in KinderSeg project: FastSurfer Database for Age-Specific Brain Volumes in Healthy Children: A Tool for Quantifying Localized and Global Brain Volume Reduction in Pediatric Patients

Python tools for Magnetic Resonance Spectroscopy - Pulses, Simulation and Analysis

A latent text-to-image diffusion model

scrape and republish facebook Events

A simple nodejs script(s) to interact with mobilizon via command line

BIDScoin converts your source-level neuroimaging data to BIDS

Pre-trained models and utilities for deep learning on medical images in Python

A PyTorch implementation for V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation

DeepBleed: 3D Volumetric Intracranial Hemorrhage Segmentation for Clinical Trials

CONN toolbox, development version (conn-toolbox.org)

The Economist's model to estimate excess deaths to the covid-19 pandemic

Mirror of the FSL-MRS gitlab repository

Code for the paper "CEREBRUM-7T: fast and fully-volumetric brain segmentation of 7 Tesla MR volumes"

Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data

Multi-format in vivo MR spectroscopy conversion to NIFTI

The NIfTI-MRS data standard: specification, code, and example data.

LCModel MR spectroscopy analysis algorithm by Stephen Provencher. Magn Reson Med 30, 672 (1993).

Nuisance removal tool for fMRI data

Gab.ai network crawler using bs4 and headless browsers written for Computational Social Sciences Lab (USC)

Unsupervised learning model of research topics over the past 5 years relating to microbiomes

Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.

Predicting MeSH Terms for Biomedical Articles

Multiple hypothesis testing in Python

Accessing the inverted repeats of archived plastid genomes