An open access book on scientific visualization using python and matplotlib

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

A Python-based module for creating flexible and robust spike sorting pipelines.

🐜🐀🐒🚶 A toolkit for robust markerless 3D pose estimation

phy: interactive visualization and manual spike sorting of large-scale ephys data

SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers

PYthon Neural Analysis Package 🍍

Awesome papers for markerless animal motion capture and 3D reconstruction.

Elephant is the Electrophysiology Analysis Toolkit

A python package for simulating 2D motion in continuous environment and spatial cell types (e.g. place cell).

Learning trajectory representations using self-supervision and programmatic supervision.

NEural MOdelS, a statistical modeling framework for neuroscience.

An active learning platform for expert-guided, data efficient discovery of behavior.

Closed-loop behavioral experiment toolkit using pose estimation of body parts.

WIP: Python port of Kilosort2

MountainSort spike sorting algorithm, version 5

Tools for identifying sharp wave ripple events using LFPs

JARVIS Markerless 3D Motion Capture Pytorch Library

Python code implementing the ZETA-test

Analysis for grid cells, grid fields, and head direction.

Linearize 2D position to 1D using an HMM