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Commits on May 23, 2017

• Fix "Rscript" shebang line

  tseemann

  committedMay 23, 2017
  e14e27b

• change blast task to blastn

  harry-thorpe

  committedMay 23, 2017
  4c29541

Commits on May 3, 2017

• change min nuc id for cdhit

  harry-thorpe

  committedMay 3, 2017
  c411289

Commits on Apr 27, 2017

• change cleanup

  harry-thorpe

  committedApr 27, 2017
  6a0cd49

Commits on Apr 11, 2017

• add overlap detection

  harry-thorpe

  committedApr 11, 2017
  2f6c45c

Commits on Mar 23, 2017

• tidy output

  harry-thorpe

  committedMar 23, 2017
  e277985

Commits on Mar 22, 2017

• add upstream mode

  harry-thorpe

  committedMar 22, 2017
  a664cac

Commits on Mar 15, 2017

• rename scripts

  harry-thorpe

  committedMar 15, 2017
  c37414b

• add dependency checks

  harry-thorpe

  committedMar 15, 2017
  00807b0

Commits on Mar 2, 2017

• add Rtab output

  harry-thorpe

  committedMar 2, 2017
  a56e445

Commits on Feb 17, 2017

• only use single copy genes

  harry-thorpe

  committedFeb 17, 2017
  ae7684e

Commits on Feb 9, 2017

• increase memory limit for cd-hit

  harry-thorpe

  committedFeb 9, 2017
  03237cc

Commits on Jan 27, 2017

• add example data

  harry-thorpe

  committedJan 27, 2017
  6deacdf

Commits on Jan 19, 2017

• change igry to piggy

  harry-thorpe

  committedJan 19, 2017
  d68f1a7

Commits on Jan 13, 2017

• remove upstream method

  harry-thorpe

  committedJan 13, 2017
  673bdcd

Commits on Dec 13, 2016

• modify plotter

  harry-thorpe

  committedDec 13, 2016
  fcf060a

Commits on Dec 7, 2016

• use fixed roary gffs

  harry-thorpe

  committedDec 7, 2016
  f7b1dd3

Commits on Dec 6, 2016

• edit plotter

  harry-thorpe

  committedDec 6, 2016
  fcadfc6

Commits on Dec 2, 2016

• edit plotter

  harry-thorpe

  committedDec 2, 2016
  7816604

Commits on Dec 1, 2016

• change plotters

  harry-thorpe

  committedDec 1, 2016
  2f6726f

Commits on Nov 29, 2016

• change alignment length parameters

  harry-thorpe

  committedNov 29, 2016
  14136cd

• modify combiner script

  harry-thorpe

  committedNov 29, 2016
  eb78361

Commits on Nov 21, 2016

• change output messages

  harry-thorpe

  committedNov 21, 2016
  b3bc305

Commits on Nov 16, 2016

• change method of identifying switched regions to include only upstream regions

  harry-thorpe

  committedNov 16, 2016
  444b57b

Commits on Nov 15, 2016

• add defaults to main script

  harry-thorpe

  committedNov 15, 2016
  6a282e1

Commits on Nov 14, 2016

• add R plots option

  harry-thorpe

  committedNov 14, 2016
  c23b0e0

• change divergence checker script

  harry-thorpe

  committedNov 14, 2016
  9ef3837

Commits on Nov 13, 2016

• make core IGRome alignment

  harry-thorpe

  committedNov 13, 2016
  e4f3467

Commits on Nov 10, 2016

• tweak coordinate extraction

  harry-thorpe

  committedNov 10, 2016
  2576e55

• make roary-like IGR presence absence csv file

  harry-thorpe

  committedNov 10, 2016
  6ffd514

Commits on Nov 9, 2016

• add install script

  harry-thorpe

  committedNov 9, 2016
  362fdec

• tweak plotter

  harry-thorpe

  committedNov 9, 2016
  47aa0d1

• make creating cluster files faster

  harry-thorpe

  committedNov 9, 2016
  6308278

Commits on Nov 8, 2016

• fix regions with many Ns

  harry-thorpe

  committedNov 8, 2016
  6d69251

• tinker with main script

  harry-thorpe

  committedNov 8, 2016
  c7257bf

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