A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file.
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Updated
Jan 18, 2022 - C
A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file.
Utility to parse PDB(Protein Data Bank) file format 3.3 into JSON format
CA-2-HCOMB is a tool for simplifying single-chain protein structures from PDB files into manageable models like various honeycombs, retaining essential information for in-depth computations. It's efficient for large datasets and machine learning, and user-friendly for research and education.
Object-oriented processing of PDB files in Python
A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.
Superpose3D is a software for local comparison of protein structures that allows for user-defined structure representations
Lattice2Backbone is a software tool that converts lattice representations of protein structures into detailed, carbon alpha-only backbone structures, bridging the gap between simplified models and comprehensive biological analysis in structural biology and bioinformatics.
Tiny Scala API to stream, parse, and cache atom coordinates from Protein Data Bank files
defines the interface region of a protein complex making possible to calculate the i_rmsd between native and predicted structures following the CAPRI criteria
Basic analysis of ligands extracted from structures described in Protein Data Bank
A Python Framework for Integrating Classical and Quantum Mechanical Simulation Data, Experimental Data, and Cheminformatics into a Unified Predictive Engine for Macromolecular Design
local PDB manager
Web-based front- and backend for PDB2Movie scripts
Methods for mapping proteomics data on 3D protein structure.
Protein Data Bank (pdb) file parser
BioJava examples in Jupyter Notebooks
Parse the CIF file format for Protein Data Bank (PDB) data.
BPL is an Python app to solve Loop Closure Problems.
👋 Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz
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