This package contains a collection of Galaxy workflows utilising deepTools.

See http://www.galaxyproject.org for information about the Galaxy Project.

Sample Data

Sample data can be obtained from http://deeptools.ie-freiburg.mpg.de/library or you can use aligned reads in BAM or SAM format.

Citation

If you use this workflow directly, or a derivative of it, or the associated deepTools wrappers for Galaxy, in work leading to a scientific publication, please cite:

{publication under review}

Availability

This workflow is available on the main Galaxy Tool Shed:

http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools_workflows

Development is being done on github:

https://github.com/deeptools/deepTools

Dependencies

These dependencies should be resolved automatically via the Galaxy Tool Shed:

• http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools