Commits

Breadcrumbs

History for

ontest

User selector

All users

Datepicker

All time

Commit History

Commits on Aug 18, 2022

• Fixed potential seg-fault.

  alexdobin

  committedAug 18, 2022
  c0ea2f1

Commits on Aug 17, 2022

• alexdobin#1619: fixed memory leak in SoloFeature_cellFiltering.cpp

  alexdobin

  committedAug 17, 2022
  f3f6d0f

Commits on Jun 1, 2022

• Bug-fix alpha: 2.7.10a_alpha_220601 : Issue alexdobin#1543: Fixed a segfault occurring for STARsolo multimappers and large number of reads per cell.

  alexdobin

  committedJun 1, 2022
  c2f3c65

Commits on May 24, 2022

• Merge pull request alexdobin#1550 from SoapGentoo/gcc-12-missing-include

  alexdobin

  committedMay 24, 2022
  3971d42

Commits on May 17, 2022

• Issue alexdobin#1558: Fixed a bug with output of GX/GN BAM tags without CB/UB. Bug-fix alpha patch: 2.7.10a_alpha_220517

  alexdobin

  committedMay 17, 2022
  071e989

Commits on May 7, 2022

• Add missing #include <array> (GCC 12)

  SoapGentoo

  committedMay 7, 2022
  f5ad943

Commits on May 6, 2022

• Bug-fix alpha: 2.7.10a_alpha_220506

  alexdobin

  committedMay 6, 2022
  070b52e

Commits on Apr 13, 2022

• Fixed a bug with --soloMultiMappers for small number of cells cases. Issue alexdobin#1513: If --soloMultiMappers options are not requested, output 'NoMulti' in the 'Reads Mapped to Gene: Unique+Mul…

  alexdobin

  committedApr 13, 2022
  03a5b8f

Commits on Mar 17, 2022

• Fixed a problem with CellReads.stats output for no-passlist runs.

  alexdobin

  committedMar 17, 2022
  f4d5de8

Commits on Mar 14, 2022

• 2.7.10a_alpha_220314. Fixed another seg-fault issue.

  alexdobin

  committedMar 14, 2022
  3cd7185

Commits on Mar 8, 2022

• Fixed typo.

  alexdobin

  committedMar 8, 2022
  b4f8215

Commits on Feb 7, 2022

• 2.7.10a_alpha_220207

  alexdobin

  committedFeb 7, 2022
  ecec9ee

• Issue alexdobin#1469: fixed seg-fault introduced in 2.7.10a; release: 2.7.10a_alpha_220207.

  alexdobin

  committedFeb 7, 2022
  c3b8fa1

Commits on Jan 15, 2022

• 2.7.10a

  alexdobin

  committedJan 15, 2022
  7f0f3f1

Commits on Jan 14, 2022

• Ready for 2.7.10a

  alexdobin

  committedJan 14, 2022
  51b64d4

Commits on Jan 13, 2022

• Fixed a bug in CB_samTagOut introduced by latest changes.

  alexdobin

  committedJan 13, 2022
  ae26add

• Fixed a bug in Velocyto introduced by latest changes.

  alexdobin

  committedJan 13, 2022
  990c301

Commits on Jan 12, 2022

• dev_ExonOverIntron_ReadStats_2021-01-12

  alexdobin

  committedJan 12, 2022
  1623bbf

• Merge branch 'assign_SA_to_correct_mate_when_mates_fully_overlap' of https://github.com/suhrig/STAR into dev_ExonOverIntron_ReadStats

  alexdobin

  committedJan 12, 2022
  93d38d9

• Finalized CellReads statistics output.

  alexdobin

  committedJan 12, 2022
  393d5ec

Commits on Jan 6, 2022

• Debugging agreement between CellReadStats and Features.stats.

  alexdobin

  committedJan 6, 2022
  037a318

Commits on Dec 28, 2021

• Output statistics for reads with CB not matching passlist.

  alexdobin

  committedDec 28, 2021
  7e952c7

Commits on Dec 23, 2021

• Fixed discrepancies between CellReadStats and BAM.

  alexdobin

  committedDec 23, 2021
  5588ac6

Commits on Dec 22, 2021

• Fixed a problem with exonic/intronic read statistics for multimappers.

  alexdobin

  committedDec 22, 2021
  413c8b9

Commits on Dec 20, 2021

• Implemented mito read counting for Solo.

  alexdobin

  committedDec 20, 2021
  4c7b1ef

Commits on Dec 17, 2021

• Fixed the problem with Features.stats for multi-gene reads.

  alexdobin

  committedDec 17, 2021
  de67f65

Commits on Dec 16, 2021

• Implemented most of Read statistics. Now need to fix a problem with unique/multi-gene read counting that manifests in Features.stats

  alexdobin

  committedDec 16, 2021
  d5599b1

Commits on Dec 14, 2021

• assign supplementary alignment to correct mate when mates fully overlap

  suhrig

  committedDec 14, 2021
  2d62195

Commits on Dec 8, 2021

• Implementing Read Statistics.

  alexdobin

  committedDec 8, 2021
  94e659a

• Reverted to normal GeneFull_EoI implementation, renamed the ParseBio_ED3 option into EditDist_3.

  alexdobin

  committedDec 8, 2021
  99ed04e

Commits on Dec 3, 2021

• Temporary implementation of GeneFullClosest3p as GeneFull_EoI, will revert in the next commit.

  alexdobin

  committedDec 3, 2021
  af3484c

Commits on Nov 15, 2021

• Switched to max ED=2 for Split-seq data.

  alexdobin

  committedNov 15, 2021
  864928e

Commits on Oct 26, 2021

• Changed --soloType CB_samTagOut behavior: if barcode cennot be matched to the passlist, CB:Z:- will be recorded (previously CB tag was absent for such reads).

  alexdobin

  committedOct 26, 2021
  bdc0e32

Commits on Oct 25, 2021

• Fixed a problem with the GeneFull_Ex50pAS option.

  alexdobin

  committedOct 25, 2021
  eb9384c

Commits on Oct 20, 2021

• Fixed a problem which results in a slightly different output for Solo SmartSeq after readAnnot.annotFeatures implementation.

  alexdobin

  committedOct 20, 2021
  3e05311

Pagination

PreviousNext