Tmux plugin for copying to system clipboard. Works on OSX, Linux and Cygwin.

basic tmux settings everyone can agree on

Continuous saving of tmux environment. Automatic restore when tmux is started. Automatic tmux start when computer is turned on.

Persists tmux environment across system restarts.

Tmux Plugin Manager

kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more

🧮 🔢 Generate multi-sample k-mer count matrix from WGS

Make coverage plots from bam files!

Per-base per-nucleotide depth analysis

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

Programs that push me to understand the python programming language.

Python and C++ code for reading and writing genomics data.

Python library to simulate evolutionary sequence data

Various (mostly bioinformatic) utility scripts

Quickly search, compare, and analyze genomic and metagenomic data sets.

🌈 Interactive analysis of metagenomics data

The complete sequence of a human genome

Fast and accurate coordinate conversion between assemblies

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

Free open-source tool to extract counts of spliced EGFR vIII / EGFR non-vIII (wt) reads

Fast and accurate gene fusion detection from RNA-Seq data

📚 Collaborative cheatsheets for console commands

A git commit browser in Vim

View the difference between two files within Obsidian.

Toolkit for processing sequences in FASTA/Q formats

Tools for working with genomic and high throughput sequencing data.

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

⛰ covtobed | Convert the coverage track from a BAM file into a BED file