mmterpstra
Follow
Stars
LoFreq Star: Sensitive variant calling from sequencing data
An ensemble approach to accurately detect somatic mutations using SomaticSeq
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Turn (almost) any Python command line program into a full GUI application with one line
A deep learning-based tool to identify splice variants
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Tools for working with genomic and high throughput sequencing data.
Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy and maintain. Automate everything from code deployment to network configuration to clo…
A modular annotation tool for genomic variants
Diablo devolved - magic behind the 1996 computer game
Python script to simulate the display from "The Matrix" in terminal. Uses half-width katakana unicode characters by default, but can use custom character sets. Accepts keyboard controls while runni…
Easily install and load packages from the tidyverse
An R package for inferring the subclonal architecture of tumors
Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
Code and information on how to unlock a WD My Passport drive in Linux.
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)
Open workflow definitions for genomic analysis from MGI at WUSM.