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miRWDL Public
miRWDL scalable mirna qualitfication on the wdl
WDL GNU General Public License v3.0 UpdatedSep 24, 2024 -
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molgenis-c5-TumorNormal Public
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cluster-utils Public
Forked from molgenis/cluster-utilsCollection of utilities / helper scripts to make life easier on our HPC clusters.
Perl GNU Lesser General Public License v3.0 UpdatedMar 5, 2024 -
easybuild-easyconfigs Public
Forked from easybuilders/easybuild-easyconfigsA collection of easyconfig files that describe which software to build using which build options with EasyBuild.
Python GNU General Public License v2.0 UpdatedFeb 27, 2024 -
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fgbio Public
Forked from fulcrumgenomics/fgbioTools for working with genomic and high throughput sequencing data.
Scala MIT License UpdatedJan 31, 2024 -
ichorCNA Public
Forked from broadinstitute/ichorCNAEstimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
R GNU General Public License v3.0 UpdatedDec 13, 2023 -
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fusioncatcher Public
Forked from ndaniel/fusioncatcherSomatic fusion genes finder for RNA-seq data
Python GNU General Public License v3.0 UpdatedFeb 21, 2023 -
wdl Public
Forked from openwdl/wdlWorkflow Description Language - Specification and Implementations
Java BSD 3-Clause "New" or "Revised" License UpdatedJan 20, 2023 -
tasks Public
Forked from biowdl/tasksA collection of reusable WDL tasks. Category:Other
WDL MIT License UpdatedJan 20, 2023 -
depad-utils Public
Forked from molgenis/depad-utilsUtilities for deploy admins
R GNU General Public License v3.0 UpdatedJan 12, 2023 -
pipeline-util Public
Misc tools for pipelines written for variant detection (GATK picard BWA SAMtools) with molgenis-compute-5.
Perl GNU General Public License v2.0 UpdatedJul 22, 2022 -
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randfold Public
Forked from erbon7/randfoldPermutation test for microRNA precursor sequences.
C GNU General Public License v2.0 UpdatedDec 22, 2021 -
mirdeep2 Public
Forked from rajewsky-lab/mirdeep2Discovering known and novel miRNAs from small RNA sequencing data
Perl GNU General Public License v3.0 UpdatedDec 17, 2021 -
VIS Public
Forked from KyranWissink/VISHGVS Variant interpretation using SPLICEAI
Python UpdatedApr 21, 2021 -
mrmosaic Public
Forked from asifrim/mrmosaicMrMosaic (Genomic Mosaic Structural Variant Caller)
C GNU General Public License v3.0 UpdatedOct 14, 2020 -
CoNVaDING_reload Public
Forked from duartemolha/CoNVaDING_reloadFork of the CoNVaDING software - Copy Number Variation Detection In NGS Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage NGS data.
HTML GNU Lesser General Public License v3.0 UpdatedApr 24, 2019 -
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BurnDown Public
Scrum burndown chart misc scripts
R GNU General Public License v3.0 UpdatedDec 5, 2018 -
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Ericscript Public
ChimERIC TranSCRIPT detection
R GNU General Public License v3.0 UpdatedOct 17, 2018 -
startmoduletut Public
wip tutorial how to start a module
GNU General Public License v3.0 UpdatedJul 10, 2018 -
TableToXlsx Public
Convert your text based tables to excel format / Minimal example of the Excel::Writer::XLSX module in perl.
Perl UpdatedJul 5, 2018 -
gatk4-data-processing Public
Forked from gatk-workflows/gatk4-data-processingWorkflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
WDL BSD 3-Clause "New" or "Revised" License UpdatedJul 2, 2018 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedJun 5, 2018 -
NGS_DNA Public
Forked from molgenis/NGS_DNANGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
Shell MIT License UpdatedJan 26, 2018