Support Jekyll 3.0

- Update to Jekyll v3.0
- Switch from Pygments.rb to Rouge for syntax highlighting
- Minor updates to syntax.scss partial and theme documentation
- Include jekyll-gist gem
- Close mmistakes#192, mmistakes#218

.gitignore

@@ -5,4 +5,6 @@ _site
 *.sublime-workspace
 codekit-config.json
 node_modules
-_asset_bundler_cache
+_asset_bundler_cache
+.jekyll-metadata
+.*.swp

Gemfile

@@ -1,5 +1,6 @@
 source "https://rubygems.org"
 
-gem 'jekyll', '2.5.3'
-gem 'jekyll-sitemap'
-gem 'octopress', '~> 3.0'
+gem "jekyll", "~> 3.0"
+gem "jekyll-sitemap"
+gem "jekyll-gist"
+gem "octopress"

Gemfile.lock

@@ -2,48 +2,28 @@ GEM
   remote: https://rubygems.org/
   specs:
     addressable (2.3.8)
-    blankslate (2.1.2.4)
-    classifier-reborn (2.0.4)
-      fast-stemmer (~> 1.0)
-    coffee-script (2.4.1)
-      coffee-script-source
-      execjs
-    coffee-script-source (1.10.0)
     colorator (0.1)
-    execjs (2.6.0)
     faraday (0.9.2)
       multipart-post (>= 1.2, < 3)
-    fast-stemmer (1.0.2)
     ffi (1.9.10)
-    ffi (1.9.10-x64-mingw32)
-    ffi (1.9.10-x86-mingw32)
-    jekyll (2.5.3)
-      classifier-reborn (~> 2.0)
+    jekyll (3.1.1)
       colorator (~> 0.1)
-      jekyll-coffeescript (~> 1.0)
-      jekyll-gist (~> 1.0)
-      jekyll-paginate (~> 1.0)
       jekyll-sass-converter (~> 1.0)
       jekyll-watch (~> 1.1)
       kramdown (~> 1.3)
-      liquid (~> 2.6.1)
+      liquid (~> 3.0)
       mercenary (~> 0.3.3)
-      pygments.rb (~> 0.6.0)
-      redcarpet (~> 3.1)
+      rouge (~> 1.7)
       safe_yaml (~> 1.0)
-      toml (~> 0.1.0)
-    jekyll-coffeescript (1.0.1)
-      coffee-script (~> 2.2)
     jekyll-gist (1.4.0)
       octokit (~> 4.2)
-    jekyll-paginate (1.1.0)
     jekyll-sass-converter (1.4.0)
       sass (~> 3.4)
-    jekyll-sitemap (0.9.0)
+    jekyll-sitemap (0.10.0)
     jekyll-watch (1.3.1)
       listen (~> 3.0)
     kramdown (1.9.0)
-    liquid (2.6.3)
+    liquid (3.0.6)
     listen (3.0.5)
       rb-fsevent (>= 0.9.3)
       rb-inotify (>= 0.9)
@@ -61,39 +41,30 @@ GEM
       titlecase
     octopress-deploy (1.3.0)
       colorator
-    octopress-escape-code (2.0.6)
-      octopress-hooks (~> 2.0)
+    octopress-escape-code (2.1.1)
+      jekyll (~> 3.0)
     octopress-hooks (2.6.1)
       jekyll (>= 2.0)
-    parslet (1.5.0)
-      blankslate (~> 2.0)
-    posix-spawn (0.3.11)
-    pygments.rb (0.6.3)
-      posix-spawn (~> 0.3.6)
-      yajl-ruby (~> 1.2.0)
     rb-fsevent (0.9.7)
     rb-inotify (0.9.5)
       ffi (>= 0.5.0)
     redcarpet (3.3.4)
+    rouge (1.10.1)
     safe_yaml (1.0.4)
     sass (3.4.21)
     sawyer (0.6.0)
       addressable (~> 2.3.5)
       faraday (~> 0.8, < 0.10)
     titlecase (0.1.1)
-    toml (0.1.2)
-      parslet (~> 1.5.0)
-    yajl-ruby (1.2.1)
 
 PLATFORMS
   ruby
-  x64-mingw32
-  x86-mingw32
 
 DEPENDENCIES
-  jekyll (= 2.5.3)
+  jekyll (~> 3.0)
+  jekyll-gist
   jekyll-sitemap
-  octopress (~> 3.0)
+  octopress
 
 BUNDLED WITH
    1.11.2

README.md

@@ -1,8 +1,6 @@
 # Minimal Mistakes
 
-**[Minimal Mistakes](http://mmistakes.github.io/minimal-mistakes)** is a two column responsive Jekyll theme perfect for powering your GitHub hosted blog.
-
-**Jekyll 3 Update:** A version of Minimal Mistakes compatible with Jekyll 3 can be found in the [`jekyll3` branch](https://github.com/mmistakes/minimal-mistakes/tree/jekyll3). GitHub Pages is [locked at version 2.4](https://pages.github.com/versions/) so some keep that in mind if you're trying to use 3.0 features that aren't supported there yet.
+**[Minimal Mistakes](http://mmistakes.github.io/minimal-mistakes)** is a two column responsive Jekyll theme perfect for powering your GitHub hosted blog built. Compatible with Jekyll 3.0 and up.
 
 ## Minimal Mistakes is all about:
 
@@ -20,6 +18,6 @@ See a [live version of Minimal Mistakes](http://mmistakes.github.io/minimal-mist
 
 ## Getting Started
 
-Minimal Mistakes takes advantage of Sass and data files to make customizing easier. These features require Jekyll 2.x and will not work with older versions of Jekyll.
+Minimal Mistakes takes advantage of Sass and data files to make customizing easier. These features require [Jekyll 2.x](https://github.com/mmistakes/minimal-mistakes/releases/tag/2.1.3) and will not work with older versions of Jekyll.
 
 To learn how to install and use this theme check out the [Setup Guide](http://mmistakes.github.io/minimal-mistakes/theme-setup/) for more information.

_config.yml

@@ -1,27 +1,28 @@
 # Site wide configuration
 
-title:            Site Title
+title:            Home
 locale:           en_US
-url:
+url:              "https://mirca.github.io"
 
 
 # Jekyll configuration
 
 permalink:   /:categories/:title/
 markdown:    kramdown
-highlighter: pygments
+highlighter: rouge
 sass:
   sass_dir: _sass
   style: compressed
 gems:
   - jekyll-sitemap
+  - jekyll-gist
 
 kramdown:
   auto_ids: true
   footnote_nr: 1
   entity_output: as_char
   toc_levels: 1..6
-  use_coderay: false
+  enable_coderay: false
 
 
 # Octopress
@@ -40,12 +41,12 @@ titlecase: true
 
 # Site owner
 owner:
-  name: Your Name
-  avatar: bio-photo.jpg
-  bio: "Describe your self."
-  email:
-  disqus-shortname:
-  twitter: #username
+  name: Zé Vinícius
+  avatar: https://raw.githubusercontent.com/mirca/mirca.github.io/master/images/ze.jpg
+  bio: "O Captain! My Captain!"
+  email: [email protected]
+  disqus-shortname: mirca-1
+  twitter: mircaze
   facebook: #username
   google:
     plus: #username
@@ -54,9 +55,9 @@ owner:
     ad-client:
     ad-slot:
   bing-verify:
-  github: #username
+  github: mirca
   stackoverflow: #123456/username   from a "http://stackoverflow.com/users/123456/username" link
-  linkedin: #username
+  linkedin: #jose-vinicius-de-miranda-cardoso-72471a82
   xing: #username
   instagram: #username
   lastfm: #username
@@ -73,3 +74,5 @@ owner:
 
 include: [".htaccess"]
 exclude: ["lib", "config.rb", "Capfile", "config", "log", "Rakefile", "Rakefile.rb", "tmp", "less", "*.sublime-project", "*.sublime-workspace", "test", "spec", "Gruntfile.js", "package.json", "node_modules", "Gemfile", "Gemfile.lock", "LICENSE", "README.md"]
+
+comments: true

_data/navigation.yml

@@ -3,8 +3,11 @@
 - title: About
   url: /about/
 
-- title: Sample Posts
+- title: Posts
   url: /posts/
 
-- title: Theme Setup
-  url: /theme-setup/
+- title: Publications
+  url: /publications/
+
+- title: Software
+  url: /software/

_includes/_disqus_comments.html

@@ -1,4 +1,4 @@
-{% if site.owner.disqus-shortname %}
+{% if page.comments %}
 <script type="text/javascript">
     /* * * CONFIGURATION VARIABLES: EDIT BEFORE PASTING INTO YOUR WEBPAGE * * */
     var disqus_shortname = '{{ site.owner.disqus-shortname }}'; // required: replace example with your forum shortname

_includes/_head.html

@@ -38,15 +38,4 @@
 <link href='//fonts.googleapis.com/css?family=PT+Sans+Narrow:400,700%7CPT+Serif:400,700,400italic' rel='stylesheet' type='text/css'>
 
 <!-- Icons -->
-<!-- 16x16 -->
-<link rel="shortcut icon" href="{{ site.url }}/favicon.ico">
-<!-- 32x32 -->
 <link rel="shortcut icon" href="{{ site.url }}/favicon.png">
-<!-- 57x57 (precomposed) for iPhone 3GS, pre-2011 iPod Touch and older Android devices -->
-<link rel="apple-touch-icon-precomposed" href="{{ site.url }}/images/apple-touch-icon-precomposed.png">
-<!-- 72x72 (precomposed) for 1st generation iPad, iPad 2 and iPad mini -->
-<link rel="apple-touch-icon-precomposed" sizes="72x72" href="{{ site.url }}/images/apple-touch-icon-72x72-precomposed.png">
-<!-- 114x114 (precomposed) for iPhone 4, 4S, 5 and post-2011 iPod Touch -->
-<link rel="apple-touch-icon-precomposed" sizes="114x114" href="{{ site.url }}/images/apple-touch-icon-114x114-precomposed.png">
-<!-- 144x144 (precomposed) for iPad 3rd and 4th generation -->
-<link rel="apple-touch-icon-precomposed" sizes="144x144" href="{{ site.url }}/images/apple-touch-icon-144x144-precomposed.png">

_includes/_scripts.html

@@ -1,4 +1,7 @@
 <script src="//ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script>
+<script type="text/javascript" async
+  src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-MML-AM_CHTML">
+</script>
 <script>window.jQuery || document.write('<script src="{{ site.url }}/assets/js/vendor/jquery-1.9.1.min.js"><\/script>')</script>
 <script src="{{ site.url }}/assets/js/scripts.min.js"></script>
 {% if site.owner.google.analytics %}