usage: RCmaxtrain [-h] [--maxpool1 MAXPOOL1] [--dropout1 DROPOUT1] [--convfilt2 CONVFILT2] [--convkern2 CONVKERN2] [--maxpool2 MAXPOOL2] [--dropout2 DROPOUT2] [--convfilt3 CONVFILT3] [--convkern3 CONVKERN3] [--maxpool3 MAXPOOL3] [--dropout3 DROPOUT3] [--dense1 DENSE1] [--lambda1 LAMBDA1] [--lambda2 LAMBDA2] [--rseed RSEED] posfile negfile outprefix
usage: RCmaxpredict [-h] [--maxpool1 MAXPOOL1] [--dropout1 DROPOUT1] [--convfilt2 CONVFILT2] [--convkern2 CONVKERN2] [--maxpool2 MAXPOOL2] [--dropout2 DROPOUT2] [--convfilt3 CONVFILT3] [--convkern3 CONVKERN3] [--maxpool3 MAXPOOL3] [--dropout3 DROPOUT3] [--dense1 DENSE1] [--lambda1 LAMBDA1] [--lambda2 LAMBDA2] [--rseed RSEED] seqfile outprefix
example:
mkdir runs
./RCmaxtrain --rseed 8 DHS_E2_72_300_noproms_nc30_hg38_top10k.fa neg1x_r2_DHS_E2_72_300_noproms_nc30_hg38_top10k.fa DHS_E2_72_300_noproms_nc30_hg38_top10k_vs_neg1x_r2_8
./RCmaxpredict DHS_E2_72_300_noproms_nc30_hg38_top10k.fa DHS_E2_72_300_noproms_nc30_hg38_top10k_vs_neg1x_r2_8