fix bug of gene version for rMATS output

louadi · Mar 7, 2022 · 490fae6 · 490fae6
1 parent ee41f60
commit 490fae6
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/nease/nease.py b/nease/nease.py
@@ -146,7 +146,7 @@ def __init__(self,
 
                             data=data[data['FDR']<=p_value_cutoff]
                             data=data[['GeneID','exonStart_0base','exonEnd','IncLevelDifference']]
-
+                            data['GeneID']=data['GeneID'].apply(lambda x: x.split('.')[0])
 
                             self.data,self.spliced_genes,self.elm_affected,self.pdb_affected,self.symetric_genes=process_standard(data,self.mapping,min_delta ,self.only_DDIs,self,remove_non_in_frame,only_divisible_by_3)